Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00503 ATGTCTTTTGTAGGAGTTTGTGATCTGAGCATAAACATGGAGCTGAGTAGCATCAAAGATGCATTTGATCGTGTAGCCAAAAAGCAAAAATTATCCTCTTCCAAGTCTCAGGAAGTTGTTGACCAGGTGGGGCGTGAAATTGAGCAGGCATTGGCAACAATTCAGTCATCCCGTGACCTCTCTTCTCCTGCTGACCAGAAATCCGTTCTCACAGAACTTAAGTTAAAGATTAATGCTATTGGACCACTTCAACAGTTGGAAGGTTCAAATAAGGAAGTGAACGGAAGTATTATCAAGTATCAAAGGCTCCTTGAAAAATTGTTAAATCCTGACATATCTAAGGCATACAGAAATGTGGACTTTGATACTCGTATTATCAATCAGATCATTGCAAACCACTTTTACCGTCAAGGTTTATTTGATCTTGGAGATAGCCTCGTAAACGAGGCTGGAGAGCCTGATGCAACTGCACTTAGATCTCAATTTTTAGAAATGCATCAGATTATTGGAGCTATGAGGGAGAAAAACCTTCAGCCTGCTCTGACATGGGTCTCTGCTAATCGAGAGAAACTTGATCATATTGGTTCTAATCTTGAGCTTAAGATTCACAGACTGCAGTTTGTAGAGGTCCTGCAAAATGGGACACAAGCTGATGCCTTAAAATACGCCCGAACTTATCTGGCCCCTTTTGCTTCCCTCAACAAGGACGAGTTCACAAAGCTCATGGGTTGCCTCTTGTATGCAGGAAGGCTAGAGAGCTCCCCTTATTCTGAGTTGATGTCCCCAATTCATTGGGAGATGACAACTGAAGAGCTCGCACGGCAGTTTTGTACTCTCTTGGGGCAGTCCTATGAGAACCCACTGAGTGTAGCAGTTGCTGCAGGAGTTGAGGGGTTGCCTACCCTGTTAAAGCTGGCAAATGTAATGGCAGCAAAGAAGCAAGAGTGGCAGGAAATGAAACAGTTGCCGGTGCCTGTAGAATTGGGTAAGGAATTTCAGTTTCACTCGATTTTTGTTTGCCCTGTGAGTAGGGATCAAGGAAGTGAAGAGAATCCTCCAATGCTGTTGCCATGCTTACATGTCCTTTGCAAGCAATCAATTATGAAGTTATCAAAAAATAGCACCCGAACATTCAAGTGTCCATATTGTCCAGCCGAAGCGACAGTTACACACTGCAGACAACTGTATTTCTGA 1194 0.433 MSFVGVCDLSINMELSSIKDAFDRVAKKQKLSSSKSQEVVDQVGREIEQALATIQSSRDLSSPADQKSVLTELKLKINAIGPLQQLEGSNKEVNGSIIKYQRLLEKLLNPDISKAYRNVDFDTRIINQIIANHFYRQGLFDLGDSLVNEAGEPDATALRSQFLEMHQIIGAMREKNLQPALTWVSANREKLDHIGSNLELKIHRLQFVEVLQNGTQADALKYARTYLAPFASLNKDEFTKLMGCLLYAGRLESSPYSELMSPIHWEMTTEELARQFCTLLGQSYENPLSVAVAAGVEGLPTLLKLANVMAAKKQEWQEMKQLPVPVELGKEFQFHSIFVCPVSRDQGSEENPPMLLPCLHVLCKQSIMKLSKNSTRTFKCPYCPAEATVTHCRQLYF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00503 397 FunFam Regulator of gluconeogenesis Rmd5 332 396 - -
Vimu2g00503 397 SMART ctlh 161 218 IPR006595 -
Vimu2g00503 397 ProSiteProfiles LIS1 homology (LisH) motif profile. 122 154 IPR006594 GO:0005515
Vimu2g00503 397 SMART ring_2 340 383 IPR001841 -
Vimu2g00503 397 ProSiteProfiles Gid-type RING finger profile. 340 383 IPR044063 GO:0061630
Vimu2g00503 397 Pfam RING-type zinc-finger 340 381 IPR027370 -
Vimu2g00503 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 396 IPR013083 -
Vimu2g00503 397 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 161 218 IPR006595 -
Vimu2g00503 397 CDD dRING_Rmd5p-like 338 386 IPR037683 -
Vimu2g00503 397 SUPERFAMILY RING/U-box 334 394 - -
Vimu2g00503 397 SMART toby_final6 214 308 IPR013144 -
Vimu2g00503 397 Pfam CTLH/CRA C-terminal to LisH motif domain 161 302 IPR024964 -
Vimu2g00503 397 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 10 396 IPR045098 GO:0004842|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00503 Vimu-Chr2 2859045 2860238 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00503 K23333 - gmx:100799584 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00503 2 2859045 2860238 Vimu2g00503 2 2859045 2860238 ECH