Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00494 ATGGGAAAAGTACCTTTTTCTAACCCTAACCCTAATTCTAATCCTAAATTAGCGAATAGCAAAAGGACCCAATCGGCGTCCGACGATGCTTCCTCTATCAACAGGAGATCGAACGACGCTGGCGTAAGTCACTCTCAATTCGTGTGCTTCAGCATATCTACGTGCACAAAGAAGGAGCTCAACGACATCAAAAATCGCCTTGTGTCGGAGCTTGAACAGGTTCGCAAGTGCAGAAATCGAATCGAATCCGGCGATTTACAGCCCGGGCAGAGCTCCAACGGCCACCCGAAGAAACCGTCAAGCAAAAAGGTTTCCGGCAACAAACGACCTTTACCGTTGAATTCCGTCAAGGAATTGAAACGGTCCCATTCGGAAGTTGGGAACACGATGAAGGTTTGCTCGCAGATTTTGCAGAAGCTGATGAAACACAAACATGGGTGGATCTTCAATGTTCCTGTTGATGTTGTCGGAATGGGACTCCACGATTACTATGATATAATTAAGCAACCCATGGATCTGGGTACTGTGAAGTCGAATCTCTCTAAGAACGTGTACTCCACGCCTTCGGATTTCGCTTCTGATGTGAGGTTAACTTTCAACAATGCACTGACTTATAACCCTAAGGGCCATGACGTATACACCATGGCGGAGCAGCTTCTGGCAAGGTTTGAGGAGCTGTATCGGCCGATGCGTGACAAATCTGAAGGTTGGATTAGACAAGATCAAGATTACGATGAAGAATTGCAGGCTAGTTCTTGGAGCCACGTGGAGCCGGAGAGGGTGAAAAAGAAGGATAATCCAATCCCTCCTGCGAAATTGCAACAAGAGCCTCCCCAGCCCCCTGCGAGTTCATCAAACCCTCCATTGTTGCAGTCTCCTGTGCGCACGCCTTCTCCAATGCGAGCCCCTCCTGTGAAGCCTTTGAAACAACCGAAGCCAAAGGCTAAGGATCCCAACAAGAGGGAGATGAGTCTGGAGGAGAAACACAAATTGGGGTTAGGGTTGCAGAGTTTGCCAGCAGAGAAAATGGAACAGGTGGTGCAGATCATAAGGAGGAGGAACGGGCATTTAAAGCAGGATGGGGATGAGATCGAGCTAGATATTGAGGCTGTTGACACAGAGACCCTTTGGGAACTTGATCGGTTAGTGACTAATTATAAGAAGATGGTTAGCAAGATTAAGAGGCAGGCATTGATGGGCAATATTAGCAACAACAATGAGCAGTCTAGCAGAGGGAACGGGGAATTGGCTGCTAGCGAGAAGGTTGATGGGGGTGCAGTGGAGGTGAAGAAGCCGAAGAAAGTAGAAGCAGGGGATGAGGATATTGACATTGGAGACGAGATGCCAATGAGTATGTTTCCCCCTGTGGAGATTGAGAAAGATAAAGATGTTGGTGGAGGGCATGCAAGTAGTAGTTCTAGTAGCTCTGGCAGTTCAAGCAGTGATTCATCATCGTCTAGTGATTCGGATTCAGGGAGTTCCTCGGGGAGTGATTCTGAAGCAGACAATGGGCATTTGTAG 1521 0.4793 MGKVPFSNPNPNSNPKLANSKRTQSASDDASSINRRSNDAGVSHSQFVCFSISTCTKKELNDIKNRLVSELEQVRKCRNRIESGDLQPGQSSNGHPKKPSSKKVSGNKRPLPLNSVKELKRSHSEVGNTMKVCSQILQKLMKHKHGWIFNVPVDVVGMGLHDYYDIIKQPMDLGTVKSNLSKNVYSTPSDFASDVRLTFNNALTYNPKGHDVYTMAEQLLARFEELYRPMRDKSEGWIRQDQDYDEELQASSWSHVEPERVKKKDNPIPPAKLQQEPPQPPASSSNPPLLQSPVRTPSPMRAPPVKPLKQPKPKAKDPNKREMSLEEKHKLGLGLQSLPAEKMEQVVQIIRRRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNYKKMVSKIKRQALMGNISNNNEQSSRGNGELAASEKVDGGAVEVKKPKKVEAGDEDIDIGDEMPMSMFPPVEIEKDKDVGGGHASSSSSSSGSSSSDSSSSSDSDSGSSSGSDSEADNGHL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00494 506 PANTHER OSJNBA0053K19.4 PROTEIN 42 499 - -
Vimu2g00494 506 MobiDBLite consensus disorder prediction 249 324 - -
Vimu2g00494 506 Pfam Bromodomain extra-terminal - transcription regulation 322 384 IPR027353 -
Vimu2g00494 506 MobiDBLite consensus disorder prediction 424 440 - -
Vimu2g00494 506 Gene3D - 316 392 IPR038336 -
Vimu2g00494 506 SMART bromo_6 122 232 IPR001487 GO:0005515
Vimu2g00494 506 Coils Coil 60 80 - -
Vimu2g00494 506 ProSiteProfiles Bromodomain profile. 141 213 IPR001487 GO:0005515
Vimu2g00494 506 SUPERFAMILY Bromodomain 124 234 IPR036427 GO:0005515
Vimu2g00494 506 CDD Bromo_plant1 129 227 IPR037377 -
Vimu2g00494 506 MobiDBLite consensus disorder prediction 1 38 - -
Vimu2g00494 506 MobiDBLite consensus disorder prediction 401 415 - -
Vimu2g00494 506 MobiDBLite consensus disorder prediction 401 506 - -
Vimu2g00494 506 MobiDBLite consensus disorder prediction 271 309 - -
Vimu2g00494 506 Pfam Bromodomain 133 217 IPR001487 GO:0005515
Vimu2g00494 506 MobiDBLite consensus disorder prediction 310 324 - -
Vimu2g00494 506 MobiDBLite consensus disorder prediction 84 100 - -
Vimu2g00494 506 PRINTS Bromodomain signature 144 157 IPR001487 GO:0005515
Vimu2g00494 506 PRINTS Bromodomain signature 160 176 IPR001487 GO:0005515
Vimu2g00494 506 PRINTS Bromodomain signature 194 213 IPR001487 GO:0005515
Vimu2g00494 506 PRINTS Bromodomain signature 176 194 IPR001487 GO:0005515
Vimu2g00494 506 MobiDBLite consensus disorder prediction 467 506 - -
Vimu2g00494 506 MobiDBLite consensus disorder prediction 81 115 - -
Vimu2g00494 506 ProSiteProfiles NET domain profile. 313 394 IPR027353 -
Vimu2g00494 506 Gene3D - 120 242 IPR036427 GO:0005515
Vimu2g00494 506 MobiDBLite consensus disorder prediction 249 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00494 Vimu-Chr2 2808465 2810183 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00494 - - gmx:100802622 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00494 2 2808465 2810183 Vimu2g00494 2 2808465 2810183 ECH