Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02960 ATGGTCTCTGCTACTTCCGTCAACATGGCGATTATGCTGTTGTTTGCGCTCTTCGCGATTTCTTCAGCCTTGGACATGTCCATAATATCCTACGACAAAGCTCACCCGGACAAGGCTACGGGGCGCACCGAGGAGGAGGTCATGTCTCTGTACGAGGAGTGGCTCGTGAAGCACGGCAAACTGTACAACGCGCTCGGGGAGAAGGATAAGAGGTTTCAGATCTTCAAAAACAACTTACAATTCGTCGACGAAATAAACTCCGCGAACCGAACCTACAGGTTGGGACTGAACCGGTTCGCGGATCTGACCAACGAGGAGTACAGGGCCAGGTACTTGGGAACGATAATTGATCCGAACCGGAGGTTGGGAAGGACCCCGAGCAATCGTTACACGCCACGGGTCGGGGACGCACTCCCAGATTCCGTTGATTGGAGGAAGGAAGCTGTTGTTGTCCCAGTCAAAGACCAAGGAAGCTGCTGTAAGCAATTTGCCACTCTCTATTGGAGCTGTTGGTCATTCTCAGCAATCGGTGCTGTAGAAGGAATTAATAAGACAGTGACTGACGAACTGATTTCATTGTCAGAACAAGAATTGGTGGATTGTGATACAGGATATAACACGGGATGCAATGGAGGACTTATGGATTATGCATTTGAGTTCATCATCAACAATGGAGACATTGATTCCGAGGAGGATTACCCTTACCGTGCTGTTGATGGTACATGTGACCACTATAGAAAAATGCCAAAGTTGTTTCTTTGTTTCCAATCTGATTTTATTCATGACCTGAGAAAAGAA 798 0.4762 MVSATSVNMAIMLLFALFAISSALDMSIISYDKAHPDKATGRTEEEVMSLYEEWLVKHGKLYNALGEKDKRFQIFKNNLQFVDEINSANRTYRLGLNRFADLTNEEYRARYLGTIIDPNRRLGRTPSNRYTPRVGDALPDSVDWRKEAVVVPVKDQGSCCKQFATLYWSCWSFSAIGAVEGINKTVTDELISLSEQELVDCDTGYNTGCNGGLMDYAFEFIINNGDIDSEEDYPYRAVDGTCDHYRKMPKLFLCFQSDFIHDLRKE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02960 266 Pfam Papain family cysteine protease 138 247 IPR000668 GO:0006508|GO:0008234
Vimu1g02960 266 SMART Inhibitor_I29_2 51 107 IPR013201 -
Vimu1g02960 266 SMART pept_c1 138 266 IPR000668 GO:0006508|GO:0008234
Vimu1g02960 266 CDD Peptidase_C1A 139 247 IPR039417 -
Vimu1g02960 266 SUPERFAMILY Cysteine proteinases 43 251 IPR038765 -
Vimu1g02960 266 Gene3D Cysteine proteinases 30 260 - -
Vimu1g02960 266 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Vimu1g02960 266 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 42 243 IPR013128 GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02960 Vimu-Chr1 41992007 41994038 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02960 K25900 - gmx:100805702 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02960 1 41992007 41994038 Vimu11g00425 11 4528471 4530762 ECH
Vimu1g02960 1 41992007 41994038 Vimu5g02379 5 34524383 34526456 ECH
Vimu1g02960 1 41992007 41994038 Vimu1g02960 1 41992007 41994038 ECH