Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02841 ATGATCCAAAAAACTCAGAAAGAATGCTTAAAACTGAGAACCATGAGTTCCATTTCTAGTCCAGCCATAGACACAACAACAACAAAACACATCATGACCTCGGATTCCCATGGTTTGTCAGATTCAAGGACAATAATGGAATGCGTGTGTGCAGCGTTGATGCCATTGATGGTGGCTGTCGCAGGTTGTTTGGGTTATTGCTCAAACAGCTTTGTGCAGAAGAACAAACGTTGTTCCTACACTGCTGAGGATTTCGAAACCCTTGCTGCTTCAACAAGATTCACAATTAAGGAAGTGGAGGCATTGCATGTGTTGTTTAAAAGGTTAAGCAGCTCCCTAATCGATGATGGTTTTATTCACAAGGAGGAGCTTCAATTGGCATTGTTTCAGACCCCAAATGGAAAATATTTTTTCCTAGATCGAGTTTTTGATGTTTTTGACCAAAAAAGAAATGGTGTAATTGAGTTTGACGAATTTGTCCTTGCTCTCAGTGTTTTCCATCCATATGCCTCCATAGATGAAAAGATTGATTTTGCATTTAAGCTCTATGACCTCAACCAAACTGGATTTATCGGAAGAGACGAAGTGAAGCAAATGGTTGTAGCCATTTTGATTGAATCAGACATGAATCTTCCTGATGATCTTCTTGAAGCTATGGTGGACAAGACAATTGCTGATGTGGATAAGGACAGTGATGGTAAAATCAGTAAAGAAGATTGGAAAGCTTTTGTGAGTGAAAATCCATCCCTCTTGATGAACATGACACTTCCTTACTTGAAGTATGAATTATAA 792 0.3902 MIQKTQKECLKLRTMSSISSPAIDTTTTKHIMTSDSHGLSDSRTIMECVCAALMPLMVAVAGCLGYCSNSFVQKNKRCSYTAEDFETLAASTRFTIKEVEALHVLFKRLSSSLIDDGFIHKEELQLALFQTPNGKYFFLDRVFDVFDQKRNGVIEFDEFVLALSVFHPYASIDEKIDFAFKLYDLNQTGFIGRDEVKQMVVAILIESDMNLPDDLLEAMVDKTIADVDKDSDGKISKEDWKAFVSENPSLLMNMTLPYLKYEL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02841 263 CDD EFh 139 200 IPR002048 GO:0005509
Vimu1g02841 263 Gene3D - 84 262 - -
Vimu1g02841 263 PANTHER CALCINEURIN B 76 260 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vimu1g02841 263 Pfam EF-hand domain pair 174 243 IPR002048 GO:0005509
Vimu1g02841 263 CDD EFh 175 245 IPR002048 GO:0005509
Vimu1g02841 263 Pfam EF hand 139 159 IPR002048 GO:0005509
Vimu1g02841 263 ProSiteProfiles EF-hand calcium-binding domain profile. 171 206 IPR002048 GO:0005509
Vimu1g02841 263 ProSitePatterns EF-hand calcium-binding domain. 184 196 IPR018247 -
Vimu1g02841 263 ProSitePatterns EF-hand calcium-binding domain. 228 240 IPR018247 -
Vimu1g02841 263 PRINTS Recoverin family signature 80 94 - -
Vimu1g02841 263 PRINTS Recoverin family signature 189 207 - -
Vimu1g02841 263 PRINTS Recoverin family signature 235 255 - -
Vimu1g02841 263 PRINTS Recoverin family signature 142 163 - -
Vimu1g02841 263 ProSiteProfiles EF-hand calcium-binding domain profile. 134 169 IPR002048 GO:0005509
Vimu1g02841 263 SMART efh_1 219 247 IPR002048 GO:0005509
Vimu1g02841 263 SMART efh_1 175 203 IPR002048 GO:0005509
Vimu1g02841 263 SMART efh_1 138 166 IPR002048 GO:0005509
Vimu1g02841 263 FunFam calcineurin B-like protein 3 84 262 - -
Vimu1g02841 263 SUPERFAMILY EF-hand 85 258 IPR011992 -
Vimu1g02841 263 ProSiteProfiles EF-hand calcium-binding domain profile. 215 250 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02841 Vimu-Chr1 40701288 40704658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02841 90 260 EF-hand Containing Proteins AT5G24270 63.158 1.57e-74 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02841 K06268 - gmx:100810494 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02841 1 40701288 40704658 Vimu1g02841 1 40701288 40704658 ECH