Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02827 ATGTCAGCTGGACCTGGACTTGAGTCCCTTGTAGATCAGACAATTTCAGTCATTACAAATGATGGACGGAATATAGTGGGAGTCCTGAAGGGCTTTGACCAGGCCACAAACATAATTCTTGATGAGTCCCATGAGCGAGTTTATTCTACAAAGCAAGGCTATGCGGTATTAGATTCTGCATTAGGCAAAGGGCTAGATCCATTTCCATCACGCAAAATGTTAGATATACTTGAGAGCGAGGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATAAGTGTTGTTGGTGAACTGGACGAAGATCTGGATTCTAATCTGGATTTATCAAAACTTAGAGCTCATCCCTTGAGACCTGTCATCCACTGA 384 0.4245 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKQGYAVLDSALGKGLDPFPSRKMLDILESEEGVQQLVLGLYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLRPVIH 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02827 127 ProSiteProfiles Sm domain profile. 2 107 IPR047575 GO:0003723
Vimu1g02827 127 CDD LSm8 5 122 IPR034103 GO:0000398|GO:0005688|GO:0046540
Vimu1g02827 127 Pfam LSM domain 7 102 IPR001163 -
Vimu1g02827 127 SUPERFAMILY Sm-like ribonucleoproteins 5 110 IPR010920 -
Vimu1g02827 127 Gene3D - 6 126 - -
Vimu1g02827 127 PANTHER LSM1 6 125 IPR044642 -
Vimu1g02827 127 SMART Sm3 5 103 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02827 Vimu-Chr1 40577248 40579977 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02827 K12627 - mof:131144441 163.31