Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02825 ATGGACCCTCCCGCAACCTACATTTCCTCCTCCGAACTTCGCAAACACAACACGCGCAACGACGCGTGGATCTCAATCCATGGCAAAATCTACGACGTTTCCTCCTGGCTCCACCGCCATCCCGGCGGCGCCCTCCCGCTTCTCACCGTTGCCGGCACAGATGCCACTGACGCCTTCCTCGCCTTCCACCCGCCCTCCTCCGCCGCCTCCCTCCTCCCCGCATTCTCCACTGGCCTCCTCCTCTCTGACTACGCCGTCTCTGCCGCCTCCTCCGACTACCGGAAGCTCCACTCCAAGCTCTCCGAACTCAACCTCTTCGAACGCAAGGGCCACACCACCCTCATCCTGCTCTCCCTCATCCTCACCCTCCTCCCTCTCTGCGTCTGCGGCGTCGTCTTCTCCGACAGCACGTGCGTGCACTTGCTCTCCGGCGCCTTGATCGGCTTCCTGTGGATTCAGAGCGGCTGGATTGGCCATGACTCCGGCCACTACAACGTCATGCTCAACCGCCGCTTTAACCGCTTAGCGCAGATCCTTTCCGGCAACGTTCTCGCCGGAATCAGCATTGCCTGGTGGAAGTGGAACCACAACGCACACCACATTGCGTGCAACAGCCTCGACTTCGATCCCGATCTTCAGCACCTACCCTTCTTCGTGGTCTCCTCTAAGTTTTTCAACTCTCTGACTTCCCAATTTTATGATAGAAAGCTCAATTTCGATTCCCTCGCTAGGTTTTTGGTCAGCTATCAGCATTGGACTTACTACCCCGTCATGTGCTTCGCCAGGGTTAACCTTTTTGCTCAGTCTTTTTTCCTTTTGTTGTCGAACAGAAAAGTGGAGAGCAGAGGAATTGAGCTTTTAGGGTTGCTTGCGTTTTGGGTTTGGTACCCTTTGTTGGTCTCTTTTTTGCCAAATTGGTGGGAGAGGGTTTTGTTCGTTGTGGCAAGCTTTTCTGTGACGGGTATTCAGCATGTGCAGTTTTGCTTAAACCATTTCTCTTCCAAAGTTTACCTTGGTCCTCCAAGTGGTGGTGATTGGTTTGAGAAGCAGACTAATGGGACTCTTGATGTCAGCTGTTCTGCTTGGATGGACTGGTTTCATGGTGGCCTGCAGTTTCAAGTGGAGCACCATCTGTTTCCCCGGCTACCGCGCTGCCATCTGAGGAAGATCGCGCCTTTGGTTAAGGATCTGTGCAAGAAGCATAACCTTCCCTACAATTGTGTGTCCTTTTGGAAGGCCAATGTGCTCACTATTCAGACACTGCGAAACGCGGCGTTGCAGGCCAGGGATGGATCTGGGCCGGCTCCCAAGAATTTGGTTTGGGAGGCTGTTAACACCCATGGATGA 1347 0.5412 MDPPATYISSSELRKHNTRNDAWISIHGKIYDVSSWLHRHPGGALPLLTVAGTDATDAFLAFHPPSSAASLLPAFSTGLLLSDYAVSAASSDYRKLHSKLSELNLFERKGHTTLILLSLILTLLPLCVCGVVFSDSTCVHLLSGALIGFLWIQSGWIGHDSGHYNVMLNRRFNRLAQILSGNVLAGISIAWWKWNHNAHHIACNSLDFDPDLQHLPFFVVSSKFFNSLTSQFYDRKLNFDSLARFLVSYQHWTYYPVMCFARVNLFAQSFFLLLSNRKVESRGIELLGLLAFWVWYPLLVSFLPNWWERVLFVVASFSVTGIQHVQFCLNHFSSKVYLGPPSGGDWFEKQTNGTLDVSCSAWMDWFHGGLQFQVEHHLFPRLPRCHLRKIAPLVKDLCKKHNLPYNCVSFWKANVLTIQTLRNAALQARDGSGPAPKNLVWEAVNTHG 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02825 448 Gene3D - 5 100 IPR036400 -
Vimu1g02825 448 PANTHER FATTY ACID DESATURASE 2 5 429 IPR012171 GO:0016491
Vimu1g02825 448 Pfam Fatty acid desaturase 140 407 IPR005804 GO:0006629
Vimu1g02825 448 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Vimu1g02825 448 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Vimu1g02825 448 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Vimu1g02825 448 SMART Cyt_b5_2 8 81 IPR001199 -
Vimu1g02825 448 CDD Delta6-FADS-like 141 403 - -
Vimu1g02825 448 PIRSF FA_sphingolip_des 2 436 IPR012171 GO:0016491
Vimu1g02825 448 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Vimu1g02825 448 Pfam Cytochrome b5-like Heme/Steroid binding domain 10 78 IPR001199 -
Vimu1g02825 448 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 82 IPR036400 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02825 Vimu-Chr1 40552012 40555622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02825 7 448 Lipid Metabolism Gene Families AT2G46210 61.765 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02825 K21737 - gmx:100776476 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02825 1 40552012 40555622 Vimu1g02825 1 40552012 40555622 ECH