Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02814 ATGGAGACCAACGCATCTTCTGACAACATCAGTTCAAACAAGTACATGGTACCTGAAGAACAGCCTTACCGAACCTGGTACCACTTTCAGCCCCCACAAAATTGGATGAACGGACCAATGTACTACAGAGGAGTTTACCACTTTTTCTATCAATTCAACCCTTATGCACCAACATTTGGGAGGCATATGGTATGGGGTCATTCTGTGTCCTATGATCTCATCAATTGGATTCATCTAAATCATGCTCTTGAACCAAGTGAGTCCTATGACATCAATGGCTGCTATTCTGGCTCAATCACAACCCTCCCTGGGGAAAAACCTATCATTATGTATACAGGGAGTGATTCTAACAAACATCAAGTTCAGAACTTGGCTGTGCCAAAGAATCTGTCAGACCCCTTCTTAAGGGAATGGGAGAAACACCCTCAAAACCCTATCTTGATTCCACCCAGTGGAGTTGAAGTGGATGGTTTTAGAGACCCTACAACTGCTTGGCAAGGAAGTGATGGGAAGTGGAGAGTGATCATTGGTGCCAAAAATGGTGATGAAGGGAAGGCTCTTCTCTATTATAGTGAGGATTTTGTTCATTGGAAACTGTTTCCTAATCCTATGTATGCATCAGAAAACACTGGAATGTTTGAGTGTCCAGATTTTTTTCCAGTGTACATCAGTGGCACAAAGAATGGGGTGGATACATCTGTGCACAACAGCAGTGTTAAGCATGTCTTGAAAACCAGCTATCAGAACAAACAACTAGAATACTATTTTCTAGGTGACTATTTCCTTGATCAGGAAAAGTTTGTTGCTGATTCTGATTTGGGAGGACCAAATCTGAACTTAATATTGGACCATGGAATGTTTTATGCTTCCAAGTCATTTTTTGACTATGCCAAAAACAGAAGGATATTGTGGGGATGGTCAAAGGAGTGTGATACCACACAAGATGATTATGAGAAAGGATGGGCTGGTCTACAGAGTATTCCAAGGCAAGTTTGGCTTCATACAAATGGGAAGATGTTGATGCAGTGGCCAATTGAAGAGGTAGAAAAGCTACGTGACAAACAAATTAGCATAAAGGGAGAGAAACTTGTTGGTGGATCAATTCTTGAAATCTCAGGTATCACTGCATCACAGGCCGATGTAGAAGTGTTGTTTGAGCTTCCAGAACTAGAGAATGCAGAGTTTGTAGATGAAAGTGAAGTTGATCCTCACTTACTGTGTAGTGAAGAATATGTATCAAGAAGTGGCATAATAGGGCCATTTGGTTTATTAGCTTTAGCATCTGAGGATCAAATAGAACACACTGCAATCTTCTTCAGAATATACAAAACCCCCAATAGATATGTATGTTTCATGTGCAGTGATCAAAGCAGGTCTTCATTGCGGGAGAATCTTGATAAATCTTCATATGGAACTATATTTGACATAGACCCTAATCAAAAAACAATTTCACTCAGAAGTTTGATTGATCGCTCCATTATTGAGAGTTTTGGGGAGAAAGGGAAAGTTTGTATTACGAGTAGAGTTTATCCCTCGTTGGCTATTGATAAAGATGCTCATCTTTTTGCATTCAACAATGGAAGACAGAGTGTCGTGATTTCAGAACTGAATGCTTGGAGCATGAAGCATGCAGAATTTGACCAAGACAAAAGCATAAAATAG 1662 0.4019 METNASSDNISSNKYMVPEEQPYRTWYHFQPPQNWMNGPMYYRGVYHFFYQFNPYAPTFGRHMVWGHSVSYDLINWIHLNHALEPSESYDINGCYSGSITTLPGEKPIIMYTGSDSNKHQVQNLAVPKNLSDPFLREWEKHPQNPILIPPSGVEVDGFRDPTTAWQGSDGKWRVIIGAKNGDEGKALLYYSEDFVHWKLFPNPMYASENTGMFECPDFFPVYISGTKNGVDTSVHNSSVKHVLKTSYQNKQLEYYFLGDYFLDQEKFVADSDLGGPNLNLILDHGMFYASKSFFDYAKNRRILWGWSKECDTTQDDYEKGWAGLQSIPRQVWLHTNGKMLMQWPIEEVEKLRDKQISIKGEKLVGGSILEISGITASQADVEVLFELPELENAEFVDESEVDPHLLCSEEYVSRSGIIGPFGLLALASEDQIEHTAIFFRIYKTPNRYVCFMCSDQSRSSLRENLDKSSYGTIFDIDPNQKTISLRSLIDRSIIESFGEKGKVCITSRVYPSLAIDKDAHLFAFNNGRQSVVISELNAWSMKHAEFDQDKSIK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02814 553 Gene3D Glycosyl hydrolase domain; family 43 33 356 IPR023296 -
Vimu1g02814 553 SUPERFAMILY Concanavalin A-like lectins/glucanases 344 543 IPR013320 -
Vimu1g02814 553 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 356 541 - -
Vimu1g02814 553 SMART glyco_32 28 501 IPR001362 GO:0004553|GO:0005975
Vimu1g02814 553 Pfam Glycosyl hydrolases family 32 C terminal 347 540 IPR013189 -
Vimu1g02814 553 SUPERFAMILY Arabinanase/levansucrase/invertase 20 345 IPR023296 -
Vimu1g02814 553 Pfam Glycosyl hydrolases family 32 N-terminal domain 28 344 IPR013148 -
Vimu1g02814 553 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 19 545 - -
Vimu1g02814 553 Gene3D - 357 541 - -
Vimu1g02814 553 CDD GH32_Fruct1-like 34 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02814 Vimu-Chr1 40443954 40446398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02814 40 551 Glycoside Hydrolase AT5G11920 54.826 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02814 - K01193 vra:106763740 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02814 1 40443954 40446398 Vimu1g02814 1 40443954 40446398 ECH