Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02813 ATGTATATATATACATGTGTTGATATGAGCAAATTGATACTTGTGGCAGCACCAATGTACTACAAAGGAGTTTACCACTTTTTCTACCAACATAATCCTCATGCAGCAACCTTCGGTGAGAAAATGGTGTGGGCTCACTCTGTGTCCTATGATCTCATCAACTGGATTCATCTGAACCATGCCATTGAGCCAAGTGAGCCGTTTGATCTTAACAGTTGTTGGTCAGGGTCAGCCACTATAATCCCAGGAAAAGAACAGCCTGTGATTCTGTACTCAGGAATTGATGATAAAAAGCACCAAGTTCAAAACATGGCTATGCCAAAGAATCTATCAGACCCCTTCTTAAGGGAATGGGTGAAACACCCTCAAAACCCTGTCATGACTCCACCAGTTGGGGTTGAAGTTGATAATTTCAGAGACCCTTCAACTGCTTGGCTGGGAAAGGATGGAAAATGGAGGGTAGTCATTGGTGCTCAAAATGGTGATGAAGGGAAGGTAGTTCTCTACCAAAGTGAGGATTTTGCTAATTGGACAGTGGAATTGAATCCTTTTTTTGCATCAGATAATACTGGAGTTTGTGAGTGTCCAGATTTTTTTCCTGTGTCCATCAATAGCACAAATGGGGTGGATACATCTGTCCAAAATCAAAGTGTTAAACAAGTGTTGAAGATAAGCTATTACCGCAGAAATCAGGACTATTATATTCTTGGTAAATATGGCAATAGTGATGGAAACTTCATTCCTGATGTTAAATTCACAGGAACTAGTTTGGACTTAAGGTTTGACTATGGTAAATTTTATGCCTCAAAGTCATTTTTTGACCATGCTAAGAGCAGAAGGATACTATGGGCGTGGGTGGACGAGTGTGACACTAGAGATGATGGCATTGAGAAAGGATGGGCTGGTCTTCAGTGTATTCCAAGGCAAGTTTGGCTTGATGAAAGTGGAAACCGGTTAATGCAATGGCCAATTGAAGAGGTAGAAAAGCTACGTGACAAACAAATTAGCATAAAGGGAGAGAAACTTGTTGGTGGATCAATTCTTGAAGTCTCAGGTATCACTGCATCACAGGCCGATGTAGAAGTGTTGTTTGAGCTTCCAGAACTAGAGAATGCAGAGTTTCTTGATGAAAGTGAAGTTGATCCTCACTTACTGTGTAGTGAAGAATATGTATCAAGAAGTGGCATAATAGGGCCATTTGGTTTATTAGCTTTAGCATCTGAGGATCAAACAGAACACACTGCAATCTTCTTCAGAATATATAAAACCTCCAATAGATATATATGTTTCATGTGCAGTGATCAAAGCAGGTCTTCATTGCGGGAGAATCTTGATAAATCTTCATATGGAACTATATTTGACATAGACCCTAATCAAAAAACAATTTCTCTCAGAAGTTTGATTGATCGCTCCATTATTGAGAGTTTTGGGGAGAAAGGGAAAATTTGCATTACGAGTAGAGTTTATCCCTCGTTGGCTATTGACAAAGATGCTCATCTTTTTGCATTCAACAATGGAAGACAGAGTGTGGTGATTTCAGAACTGAATGCTTGGAGCATGAAGCATGCAGAATTTGACCAAGACGAAAGCATATATCAGCAGTAG 1605 0.3988 MYIYTCVDMSKLILVAAPMYYKGVYHFFYQHNPHAATFGEKMVWAHSVSYDLINWIHLNHAIEPSEPFDLNSCWSGSATIIPGKEQPVILYSGIDDKKHQVQNMAMPKNLSDPFLREWVKHPQNPVMTPPVGVEVDNFRDPSTAWLGKDGKWRVVIGAQNGDEGKVVLYQSEDFANWTVELNPFFASDNTGVCECPDFFPVSINSTNGVDTSVQNQSVKQVLKISYYRRNQDYYILGKYGNSDGNFIPDVKFTGTSLDLRFDYGKFYASKSFFDHAKSRRILWAWVDECDTRDDGIEKGWAGLQCIPRQVWLDESGNRLMQWPIEEVEKLRDKQISIKGEKLVGGSILEVSGITASQADVEVLFELPELENAEFLDESEVDPHLLCSEEYVSRSGIIGPFGLLALASEDQTEHTAIFFRIYKTSNRYICFMCSDQSRSSLRENLDKSSYGTIFDIDPNQKTISLRSLIDRSIIESFGEKGKICITSRVYPSLAIDKDAHLFAFNNGRQSVVISELNAWSMKHAEFDQDESIYQQ 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02813 534 Gene3D - 336 520 - -
Vimu1g02813 534 Pfam Glycosyl hydrolases family 32 C terminal 326 519 IPR013189 -
Vimu1g02813 534 CDD GH32_Fruct1-like 17 312 - -
Vimu1g02813 534 SUPERFAMILY Concanavalin A-like lectins/glucanases 323 522 IPR013320 -
Vimu1g02813 534 Gene3D Glycosyl hydrolase domain; family 43 15 335 IPR023296 -
Vimu1g02813 534 SMART glyco_32 17 480 IPR001362 GO:0004553|GO:0005975
Vimu1g02813 534 SUPERFAMILY Arabinanase/levansucrase/invertase 17 324 IPR023296 -
Vimu1g02813 534 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 335 520 - -
Vimu1g02813 534 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 16 524 - -
Vimu1g02813 534 Pfam Glycosyl hydrolases family 32 N-terminal domain 17 323 IPR013148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02813 Vimu-Chr1 40439090 40441126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02813 17 528 Glycoside Hydrolase AT1G55120 52.490 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02813 - K01193 gmx:100806220 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02813 1 40439090 40441126 Vimu1g02813 1 40439090 40441126 ECH