Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02812 ATGAAGATCATTGCAGAGCTACTGTTATTTGTTGTAGTTTCTTTTCTGCTCAACAGTGGAAATGGAATTCAAGCATTCTCCACACATAGCATCAATTCTGGAGCAACTGCAAAGCAACCTTATAGAACTTCTTATCACTTTCAGCCCCAAGAAAATTGGATGAACGATCCCAATGGGCCTATGTACTACAAAGGTGTTTACCACCTTTTCTATCAGCATAACCCTGAAGCAGCAACCTTTGGTGATAGGATTGTGTGGGGTCACTCAGTATCCTATGATCTCATCAATTGGATTCATCTGAATAATGCTATTGAACCAAGTGGACCGTATGATATTAATAGCTGTTGGTCAGGCTCAGCCACTATAATCCCTGGGAAAGAAGAGCCTATGATTTTGTACACGGGAATTGATGATAAGAAACACCAAGTTCAGAACTTAGCTGTGCCGAGGAATCTATCTGACACCTTCTTAAGGGAATGGGTGAAACACTCTCAGAACCCTGTGATGACTCCACCAAGTGGAGTTGAAGTTGATAATTTCAGAGACCCTTCAACTGCTTGGCAGGGAAAGGATGGGAAATGGAGGGTAGTAGTTGGTGCCCAAAATGGTGATGAAGGGAAGGCAATTCTCTACCAAAGTGAGGATTTTGTTAATTGGAAAGTGGATCCTAATCCCTTTTATGCATCACAAAACACTGGGGTTTGTGAGTGTCCAGACTTTTTTCCTGTGTACATCAATGGCAGCACAAATGGGGTGGAAACATCTTTGCAAAATCCAAGTGTCAGACATGTCTTGAAGATAAGCTACCTACGCAAGCAGCATGATTACTATTTTCTTGGTAACTATGCATCTGATCAGGGAAACTTCATTCCTGATGTCAGGTTTACAGGGACTAGTTCAGACTTGAGGTATGACTATGGTAAATTCTATGCTTCCAAGTCATTTTTTGAAACTGCCAAAAACAGGAGAATATTGTGGGGATGGGTGAACGAATCTGACTCCACACAAGATGATATTCAGAAAGGATGGGCTGGTCTACAGACAATTCCAAGGCAAGTTTGGCTTGATAAAAGTGGGAAGCGATTGGTTCAGTGGCCACTTGAAGAGGTAGAACAACTACGTGGGAAGCACATAAGAATAACGAGGGAGAACCTTGAGCATGGATCAAATCTTGAAGTCTCGGGTATCACTGCATCACAGGCCGATGTAGAAGTGTTGTTTGAGCTACCTGAGCTAGAAAAGGCCGAGTTTCTTGATCCAAATGGAGTTGATCCCCAACTACTTTGTAGCCAAGAATATGCAGCAAGAAGTGGCACAATAGGGCCATTTGGGTTGTTAGCTTTGGCTTCAAAGGATCTCAAAGAGCACACTGCAGTCTTCTTCAGAATTTATAGAGCACCCAATGGATATGTATGCCTCATGTGCAGTGACCAAAGCAGATCCTCATTGAGGCATGACCTTGACAAAACTACATATGGAAGTATCTTAGACATAGATCCCAATCTAAAAACGATTTCACTAAGAAGCTTGATTGATCACTCCATTGTTGAGAGTTTTGGAGATGAAGGGAGAGTTTGTATCACTAGCAGAGTTTATCCTTCATTGGCTATAGACAAAGATGCTCATCTTTATGTATTTAACTATGGAAGCCAGAGTGTGGTGGTTTCAGAACTGAACGCTTGGAGCATGAAACAAGCAGAGATTGGGTATGAGGGAAACATAAGCTATACCTGA 1734 0.4204 MKIIAELLLFVVVSFLLNSGNGIQAFSTHSINSGATAKQPYRTSYHFQPQENWMNDPNGPMYYKGVYHLFYQHNPEAATFGDRIVWGHSVSYDLINWIHLNNAIEPSGPYDINSCWSGSATIIPGKEEPMILYTGIDDKKHQVQNLAVPRNLSDTFLREWVKHSQNPVMTPPSGVEVDNFRDPSTAWQGKDGKWRVVVGAQNGDEGKAILYQSEDFVNWKVDPNPFYASQNTGVCECPDFFPVYINGSTNGVETSLQNPSVRHVLKISYLRKQHDYYFLGNYASDQGNFIPDVRFTGTSSDLRYDYGKFYASKSFFETAKNRRILWGWVNESDSTQDDIQKGWAGLQTIPRQVWLDKSGKRLVQWPLEEVEQLRGKHIRITRENLEHGSNLEVSGITASQADVEVLFELPELEKAEFLDPNGVDPQLLCSQEYAARSGTIGPFGLLALASKDLKEHTAVFFRIYRAPNGYVCLMCSDQSRSSLRHDLDKTTYGSILDIDPNLKTISLRSLIDHSIVESFGDEGRVCITSRVYPSLAIDKDAHLYVFNYGSQSVVVSELNAWSMKQAEIGYEGNISYT 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02812 577 SMART glyco_32 46 523 IPR001362 GO:0004553|GO:0005975
Vimu1g02812 577 CDD GH32_Fruct1-like 52 355 - -
Vimu1g02812 577 SUPERFAMILY Concanavalin A-like lectins/glucanases 366 565 IPR013320 -
Vimu1g02812 577 SUPERFAMILY Arabinanase/levansucrase/invertase 37 366 IPR023296 -
Vimu1g02812 577 Gene3D Glycosyl hydrolase domain; family 43 51 378 IPR023296 -
Vimu1g02812 577 Pfam Glycosyl hydrolases family 32 N-terminal domain 46 366 IPR013148 -
Vimu1g02812 577 Pfam Glycosyl hydrolases family 32 C terminal 369 562 IPR013189 -
Vimu1g02812 577 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 32 568 - -
Vimu1g02812 577 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 378 563 - -
Vimu1g02812 577 ProSitePatterns Glycosyl hydrolases family 32 active site. 46 59 IPR018053 GO:0004553|GO:0005975
Vimu1g02812 577 Gene3D - 379 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02812 Vimu-Chr1 40429460 40432119 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02812 61 568 Glycoside Hydrolase AT3G13790 57.447 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02812 - K01193 gmx:100777487 1059.28