Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02791 ATGAAGCTTTGGTGCTGTCTATGCTTCACTGAAGAGGAACAAGATAACCTAAACCTCATGAAGGAAGAGGACATTTCCGAAAACGACGTCGTTCCCGGCGTTGGAGCTGCTGCTCTCGCTGACCACCACGCTGACGACAACCGTAACGATGACCGATTCGCGATGACGCCGGTGCAGCCGCGCGCCGAGGCATTGGTCTCTTGGACCGGCGAGTGCAGCGCCGCCGCGTGCTCGGACAGCACCGTCGCAGGCAGCGTCGAGAGCCGCGATTTGAGCCACAAGCGCGCCAAGTTCTACGCCGATTTCGAGGAGCGGTACTTTTCGACGAATGCAGGGAAATGCAGTGCGTCTAATGAATATGGAGACTATGACTTCATTAACGATTCTCTTCGACCCAACGGTGAGACTTTCTGTGATACATTTGCATTGATGGGTGGTGGCGAGGAGAGTGGTTTTGATTCCAGCATTGTGGAAGACGGTGAAGGAGATAATAGTGATATCTTGAAAGTGGAAGATGTAGAGGTCAGAATGGATCTCACCGATGACTTGTTGCATATGGTTTTCTCGTTTTTGGATCATCCCAATCTCTGCAAAGCTGCCAGGGTTTGTAAACAGTGGCGAAGTGCAAGTGCTCATGAAGATTTCTGGAAAAGCTTGAATTTTGAAGATCGTAACATCTCTGTCGAACAATTTGAGGACATGTGTAGGCGTTATCCCAATGCCACAGCAGTGAGCATATCTGGTTCTGCTATTTACTTGCTTGTCATGAGGGCCATCTCTTCATTAAGGAATCTTGAGGTTCTAACATTAGGAAGAGGACAAATAGCTGATACTTTTTTCCATGCTTTAGCTGATTGTTCTATGTTAAAAAAGTTGAATATAAATGATTCTACACTTGGCAATGGCATTCAAGAGATAACTATAAATCATGACAGATTGTGTCATCTTCAATTAACAAAATGCCGTGTGATGCGAATAGCAGTCAGGTGCCCACAACTGGAAACTATGTCATTGAAGCGCAGTAACATGGCACAGGTTGTACTCAATTGTCCACTTTTGCATGAGCTTGATATAGGCTCTTGCCACAAACTTCCTGATGCTGCAATACGAGCTGCTGCAACTTCATGCCCTCAACTTGTTTCACTGGACATGTCAAATTGTTCTTGTGTCAGTGATGAAACTCTGCGTGAAATAGCATTGAGTTGTGCTAGCCTTAGTTTTCTTGATGCATCATACTGCCCAAACATTTCTCTGGAGTCTGTTACACTGCCGATGTTGACAGTTCTAAAGCTTCATAGTTGTGAGGGGATCACTTCTGCCTCAATGGCTGCAATAGCTCATAGTGATATGTTGGAGGTTTTGGAGCTTGATAATTGTAGCCTGCTGACATCAGTGTCATTGGATCTTCCCCGTTTGCAGACTATTAGATTGGTACACTGTCGCAAGTTTGCCGATTTAAACTTGAGGACTATGATGCTTTCTAATATTCTGGTATCAAACTGTCCTGCACTTCATCGTATCAATATCACTTCAAATTCACTTCAAAAACTAGCATTGCAAAAGCAAGAAAGTTTAACCACCTTAGCTCTACAATGTCAATCTTTACAAGAAGTGGACCTCTCAGAGTGTGAATCTTTGACAAACTCTATATGTGATGTTTTTAACGATGTTGGAGGATGCCCTATGCTGAAATCACTAGTTCTAGCTAATTGTGAGAGCTTGACTTCGGTTCGGTTCTTCAGCACCTCTTTGGTCAGTCTTTCCCTTGCTGATTGTCGGGCAATCACTACTCTGGAGCTCACATGCCCCAACCTTGAGAAAGTCATTTTGGATGGTTGTGATCATTTAGAAAGAGCATCCTTTTGTCCTGTTGGTCTTCGATCTCTCAATCTAGGAATATGTCCAAAATTAAATATACTCAGCATAGAAGCCACGGTTATGGTCTCACTTGAGTTGAAAGGATGTGGTGTACTGTCTGAAGCATCAGTTAATTGTCCTCTCTTGACATCTTTGGATGCTTCATTTTGCAGCCAACTCACTAATGAATGCTTGTCTGCTACAACTGCCTCTTGCCCAATGATTGAATCATTAATATTGATGTCATGCTCATCAATTGGTTTGGATGGACTGTGCTCTTTGCAGCGGCTCCCAAATTTGACCCTACTTGATTTATCGTATACCTTTTTGGTCAATTTGCAGCCTGTTTTTGAGTCTTGTACACAGCTAAAGTTCTTGCTAGTCAGCACCCTGACAAACCTCTTCATGTGCCACCTTTGCATAGATTCTTTGTGGCGTGTGCATCACTGCAGGTGTTGCCTTGTCATCGGAGCTTTGACATGCTGCCACAAGCAGTCATTGCGTATCTCTGGTCTTCTCTGGTCCTATTTCAAGCCTCCTTACCTTTTTGCCTTTCTTAGGGTAGCTGTATTAAAGTTGCAGGCATGCAAATATCTCACTGACTCATCACTTGAGCCCCTCTACAAGAGAGGAGCTTTACCAGCACTTCAGGAGTTAGACTTGTCTTATGCTACACTATGTCAGTCTGCTATAGAGGAGCTTCTTTCTTGCTGCACACACCTTACACATGTCAACTTGACTGGCTGTGCCAATATGCACGACTTAAATTGGGGATGTAGTCGTGGGCATATTGCTGGTGTAAATGTGCTATCTATTACAAGTTCTTATGAAAATGTCCATGAGCTAAGTGAGCAACCCACTCGACTACTGCAGAACTTAAACTGCGTGGGATGTCTGAACATTCGGAAAGTTTTCATTCCATTAACGGCACATTGTTCCTGTTTGTTGTTTTTAAACCTTTCTCTATCAACGAATTTGAAAGAGGTTGATGTTGCATGTCTCAACCTAAGCTGGCTTAATCTAAGCAATTGTTACTCTTTGGAAGTTTTGAAGCTAGATTGTCCAAGATTGACCAGTCTATTCCTCCAGTCTTGCAACATTGACGAAGAAGCAGTAGAGACTGCTATATCCAAATGCTGCACTATGCTGGAGACTCTTGATGTTCGCTTCTGTCCAAAGATTAGCTCAATGAGCATGGGAAGATTGCGTGCAGCATGTCCTAGTTTGAAGCGTATATTCAGCAGCTTGTCAACTTCATAA 3117 0.4366 MKLWCCLCFTEEEQDNLNLMKEEDISENDVVPGVGAAALADHHADDNRNDDRFAMTPVQPRAEALVSWTGECSAAACSDSTVAGSVESRDLSHKRAKFYADFEERYFSTNAGKCSASNEYGDYDFINDSLRPNGETFCDTFALMGGGEESGFDSSIVEDGEGDNSDILKVEDVEVRMDLTDDLLHMVFSFLDHPNLCKAARVCKQWRSASAHEDFWKSLNFEDRNISVEQFEDMCRRYPNATAVSISGSAIYLLVMRAISSLRNLEVLTLGRGQIADTFFHALADCSMLKKLNINDSTLGNGIQEITINHDRLCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIALSCASLSFLDASYCPNISLESVTLPMLTVLKLHSCEGITSASMAAIAHSDMLEVLELDNCSLLTSVSLDLPRLQTIRLVHCRKFADLNLRTMMLSNILVSNCPALHRINITSNSLQKLALQKQESLTTLALQCQSLQEVDLSECESLTNSICDVFNDVGGCPMLKSLVLANCESLTSVRFFSTSLVSLSLADCRAITTLELTCPNLEKVILDGCDHLERASFCPVGLRSLNLGICPKLNILSIEATVMVSLELKGCGVLSEASVNCPLLTSLDASFCSQLTNECLSATTASCPMIESLILMSCSSIGLDGLCSLQRLPNLTLLDLSYTFLVNLQPVFESCTQLKFLLVSTLTNLFMCHLCIDSLWRVHHCRCCLVIGALTCCHKQSLRISGLLWSYFKPPYLFAFLRVAVLKLQACKYLTDSSLEPLYKRGALPALQELDLSYATLCQSAIEELLSCCTHLTHVNLTGCANMHDLNWGCSRGHIAGVNVLSITSSYENVHELSEQPTRLLQNLNCVGCLNIRKVFIPLTAHCSCLLFLNLSLSTNLKEVDVACLNLSWLNLSNCYSLEVLKLDCPRLTSLFLQSCNIDEEAVETAISKCCTMLETLDVRFCPKISSMSMGRLRAACPSLKRIFSSLSTS 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02791 1038 SMART fbox_2 179 219 IPR001810 GO:0005515
Vimu1g02791 1038 CDD F-box_FBXO41 181 220 - -
Vimu1g02791 1038 ProSiteProfiles F-box domain profile. 173 219 IPR001810 GO:0005515
Vimu1g02791 1038 SMART LRR_CC_2 423 448 IPR006553 -
Vimu1g02791 1038 SMART LRR_CC_2 376 401 IPR006553 -
Vimu1g02791 1038 SMART LRR_CC_2 469 494 IPR006553 -
Vimu1g02791 1038 SMART LRR_CC_2 973 997 IPR006553 -
Vimu1g02791 1038 SMART LRR_CC_2 691 716 IPR006553 -
Vimu1g02791 1038 SMART LRR_CC_2 532 556 IPR006553 -
Vimu1g02791 1038 SMART LRR_CC_2 857 892 IPR006553 -
Vimu1g02791 1038 SMART LRR_CC_2 560 590 IPR006553 -
Vimu1g02791 1038 SMART LRR_CC_2 350 375 IPR006553 -
Vimu1g02791 1038 SMART LRR_CC_2 665 690 IPR006553 -
Vimu1g02791 1038 SMART LRR_CC_2 602 627 IPR006553 -
Vimu1g02791 1038 SMART LRR_CC_2 286 309 IPR006553 -
Vimu1g02791 1038 SMART LRR_CC_2 832 856 IPR006553 -
Vimu1g02791 1038 SMART LRR_CC_2 999 1024 IPR006553 -
Vimu1g02791 1038 Gene3D Ribonuclease Inhibitor 501 639 IPR032675 -
Vimu1g02791 1038 FunFam F-box/LRR-repeat protein 15 171 420 - -
Vimu1g02791 1038 PANTHER OS10G0396666 PROTEIN 163 1038 - -
Vimu1g02791 1038 Gene3D Ribonuclease Inhibitor 776 880 IPR032675 -
Vimu1g02791 1038 Gene3D Ribonuclease Inhibitor 421 500 IPR032675 -
Vimu1g02791 1038 Gene3D Ribonuclease Inhibitor 640 743 IPR032675 -
Vimu1g02791 1038 Gene3D Ribonuclease Inhibitor 963 1036 IPR032675 -
Vimu1g02791 1038 FunFam F-box/LRR-repeat protein 15 422 581 - -
Vimu1g02791 1038 Pfam F-box-like 181 221 IPR001810 GO:0005515
Vimu1g02791 1038 SUPERFAMILY RNI-like 796 1031 - -
Vimu1g02791 1038 SUPERFAMILY F-box domain 178 209 IPR036047 GO:0005515
Vimu1g02791 1038 FunFam F-box/LRR-repeat protein 15 isoform C 890 1034 - -
Vimu1g02791 1038 SUPERFAMILY RNI-like 200 466 - -
Vimu1g02791 1038 Gene3D Ribonuclease Inhibitor 171 420 IPR032675 -
Vimu1g02791 1038 SUPERFAMILY L domain-like 353 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02791 Vimu-Chr1 40219507 40229823 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02791 - - gmx:100782842 1522.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02791 1 40219507 40229823 Vimu1g02791 1 40219507 40229823 ECH