Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02784 ATGGGTGAAGCTCCAGTCTTCTACATTAATGGCTTCTCAAAGTTTGAACACCAAATCCAACAACAGAACCATGATTCCTCTTGGTACGAGGAAATCATCGATGAAGATCTCAAATGGTCTTTTAAACTCAACAGTGTGCTTCATAAAGCGATTAGTGAATACCAGGATATAACACTCTTAGACACCAAGCGTTTTGGCAAGGCTTTGGTTCTTGATGGCAAGATGCAGAGTGCAGAAACAGACGAGTTTATCTATCACGAATGCTTGATTCACCCTTCTCTTTTGTGTCACCCTAATCCCAAGACTGTGTTTATAATGGGAGGAGGTGAGGGTTCTGCAGCAAGAGAAGCCCTTAAGCACAAGTCAATCGACAGAGTCGTTATGTGCGATATCGATAAGGAAGTGGTAGATTTCTGCAAAAAATACTTGATTGCAAATAGGGAAGCATTTTCTAATAAGAAGCTGGACCTTGTGATCAATGATGCGAAGGCTGAATTGGTGAAGAGAAAGGAGAGATTTGATATCATTGTTGGAGATTTAGCAGACCCACTTGAAGATGGACCATGTTACCAACTCTACACCAAATCCTTCTATGAGAACACACTCAAACCAAAGTTAAATGATAATGGCATTTTTGTCACCCAGGCTGGACCAGCAGGTATCTTCACACACAAAGAAGTTTTCACTTCTATATATAACACAATCAAACAGGTCTTCAAATATGTCATTGCATACACAACTCATGTACCATCATTTGCTGACACATGGGGATGGGTCATGGCTTCGGATCAACCACTATCAATTTGTGCTGAAGAAATGGACAGAAGAATTGCAGAAAGAATAGACGGAGAACTTCTCTATCTAAATGGTGCTTGGTTCCATTCATCCACAACCATGAACAAAACTGTTTACCAATCTCTGCAGAATGAAAGTCATGTGTACACAGAAGAAAATGCTAGATTTATTCCAGGGCATGGAGTGGCTTTTCGTCTCTAA 996 0.4046 MGEAPVFYINGFSKFEHQIQQQNHDSSWYEEIIDEDLKWSFKLNSVLHKAISEYQDITLLDTKRFGKALVLDGKMQSAETDEFIYHECLIHPSLLCHPNPKTVFIMGGGEGSAAREALKHKSIDRVVMCDIDKEVVDFCKKYLIANREAFSNKKLDLVINDAKAELVKRKERFDIIVGDLADPLEDGPCYQLYTKSFYENTLKPKLNDNGIFVTQAGPAGIFTHKEVFTSIYNTIKQVFKYVIAYTTHVPSFADTWGWVMASDQPLSICAEEMDRRIAERIDGELLYLNGAWFHSSTTMNKTVYQSLQNESHVYTEENARFIPGHGVAFRL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02784 331 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 26 263 IPR030374 -
Vimu1g02784 331 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 17 318 - -
Vimu1g02784 331 Gene3D Vaccinia Virus protein VP39 79 330 IPR029063 -
Vimu1g02784 331 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 308 IPR029063 -
Vimu1g02784 331 FunFam Polyamine aminopropyltransferase 79 326 - -
Vimu1g02784 331 Pfam Spermidine synthase tetramerisation domain 28 79 IPR035246 -
Vimu1g02784 331 Hamap Polyamine aminopropyltransferase [speE]. 27 308 IPR001045 GO:0003824
Vimu1g02784 331 Gene3D Spermidine synthase, tetramerisation domain 26 78 IPR037163 -
Vimu1g02784 331 CDD AdoMet_MTases 107 215 - -
Vimu1g02784 331 Pfam Spermine/spermidine synthase domain 82 260 - -
Vimu1g02784 331 NCBIfam fused MFS/spermidine synthase 99 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02784 Vimu-Chr1 40110298 40114698 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02784 K18787 - gmx:100815510 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02784 1 40110298 40114698 Vimu1g02784 1 40110298 40114698 ECH