Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02714 ATGGATTCCCACATGATAGGGCATTCATTGTTTCGGTTACAAAGAAGCACAAGTGTCACAGGAAAGCAAGAAGAAAAAGCAGTTAATGTAGAAGATGATATAAGATTGGAAGAGGAATATAAGTATATTGAAGAAGGAGAAAACCCTAATTGGAGGATTAGGGACGCAATCGACGACGACGTAGATGCTTGTTGTGGTTGGAGTGTCGTGGGATCTGAATTGGTTCCTGCAACTGTTGCTCTCCGTGATCGTCGTGGCCTCCACCGCTTCCAAGTACTTCGAGGTCGACGCCAATTTCGAAGGGGACCAGCACCACGCCCTCGCCGACGCAATGCCCGGCGTTCTATCCTCCGCCGACGATTCTCTCTGCGCCATCTGCGCCACCCCCACCTCCAAGAAGTGCTCGCGCTGCAAAGCGCTCCCAAGAATGCCAGCAGTCGCATTGGAGGTCTGGTCATAAGACAGTATGCAAGGATTTTCACCAAGCTGGTGCAAGAAGCCCGGCTCAAAATGGGCTCTTCAGCGATTGCGCTGATACCTGCCCGTGGAACAATTTATAGGCCAATTAAGCAGCCTAAAGATAATGTTGTGCTCTTTACCCAAGAAACAGCTCAATCAGCACAAGTTGCTGACTCCTTCTGGAGCCTTCCCAAAGTTCTTTTTCCCTATGATGAATTTGTCAAATATTTTAACTGGAACAAGCTAGGATTTCCTCCATGTGGGCTATTGAATTGTGGAAACAGGTTTTGCCTCTCATTCACAAGGCCACTTGTTGCCTACTTGTTGGAGAAGGGTCACCGCAGTTGTAATGATTGGTGCTTTTTATGTGAATTTGAAAATCATGTTGAAAGAACAATGCAAAGTTCACAAGTGTTTTCTCCTATGAATATTCTCTCTCGATTGCCTAATATCGGTGGTACTCTAGGCTATGGAAGACAAGAAGATGCTCATGAGTTTATGAGGTTTTCCATTGATACCATGCAATCTGTTTGCCTTGATGAGTTTGGTGGAGAAAAAGCTGTCCCTCCTAACCTCCAGGAGACTACCCTTATTCAACACATATTTGGTGGCCGTCTACAATCTGAGGTGGTTTGCACAAAATGCGAAAAGATTTCAAAACAGTATGAAAATATGATGGATTTGACAGTTGAGATTCATGGAGATGCTGCCTCCTTGGAGGAATGTCTAGATCAGTTTACTGCCAGGGAGCCACTTGATGGGGAAAATATGTATAAATGTGAGGGGTGCAAGGATTATGTCAAGGCATGGAAACGCCTTACTGTGAAATGTGCTCCAAATATTCTTACTGTCGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGGAAACTTAACAAGAGAATAGCCTTCCCTGAGACTTTAAATCTTAGCCCTTATATGAGTGAAGCTGGAGATGGATCTGATGTTTATAAGTTGTATGGTGTTGTGGTACATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGACTTCCTGGGGAACTGGTATAGGATTGATGACTGGAAGGTTACGAGTGTGGAGTTGGAAGAGGTACTTTCTGAGGGAGCATATATGCTTTTGTATAGCAGGTGTAGTGCCCGGCCATCAGGCCTTCAAATTCAAACTAGTGAATCTTCAGGGATAGCAGAAGTTCAAACAACAGAAGTGGAAGTGGAGCCTGGACAAACTCACCTCCTTTCGAAAATGAAGACTTTAACTTGTAGTAGAGGTTCTGAGGTTTTGCCATCTGATAATAGTCCAGAATCGAAAGTTTCTTCCACCTATGATTGCGAGTCTTCTGCTGGATTGAACTCAGAAGCCAAAAGAGAGCAGTTTGAGGATACGGGCATGATTAATGTTGATTCAACTGGTATTGAAAATGAAATTTCTTGTACTGCTGTTGAATCAACATCTGTGCCTATTTCTCAAACCGTCAACGATTTGGGGGATGTAGATATAACGGACAGATCATTTGAAGGGACTTCAGGCGAGCAAGATAATGCTGATATGGTTAGGGCGTCTGGTTCTTGTCCTGGTTCACCGAATGACTCTTCCTTCCTCGGTAAGCATTCTTCCGTTTCAAGGGATCATCGAAACGTGGAAGATTTAGAACACAAAGCTGTGGTTAAAGACAAGTTGATTACAGCTAAAGATAATACGTATTATGGTAATGGATGTGTCAGTGCAAACGAGTCTTCTATTCCAGTTGAAGACGCAGGCAAACAAATTTCTGGCACCGGTTCTTCCCACTGA 2268 0.4378 MDSHMIGHSLFRLQRSTSVTGKQEEKAVNVEDDIRLEEEYKYIEEGENPNWRIRDAIDDDVDACCGWSVVGSELVPATVALRDRRGLHRFQVLRGRRQFRRGPAPRPRRRNARRSILRRRFSLRHLRHPHLQEVLALQSAPKNASSRIGGLVIRQYARIFTKLVQEARLKMGSSAIALIPARGTIYRPIKQPKDNVVLFTQETAQSAQVADSFWSLPKVLFPYDEFVKYFNWNKLGFPPCGLLNCGNRFCLSFTRPLVAYLLEKGHRSCNDWCFLCEFENHVERTMQSSQVFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKAVPPNLQETTLIQHIFGGRLQSEVVCTKCEKISKQYENMMDLTVEIHGDAASLEECLDQFTAREPLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTVALKRFQSGRFGKLNKRIAFPETLNLSPYMSEAGDGSDVYKLYGVVVHIDMLNASFFGHYICYIKDFLGNWYRIDDWKVTSVELEEVLSEGAYMLLYSRCSARPSGLQIQTSESSGIAEVQTTEVEVEPGQTHLLSKMKTLTCSRGSEVLPSDNSPESKVSSTYDCESSAGLNSEAKREQFEDTGMINVDSTGIENEISCTAVESTSVPISQTVNDLGDVDITDRSFEGTSGEQDNADMVRASGSCPGSPNDSSFLGKHSSVSRDHRNVEDLEHKAVVKDKLITAKDNTYYGNGCVSANESSIPVEDAGKQISGTGSSH 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02714 755 FunFam Ubiquitin carboxyl-terminal hydrolase 15 234 544 - -
Vimu1g02714 755 SUPERFAMILY Cysteine proteinases 236 538 IPR038765 -
Vimu1g02714 755 MobiDBLite consensus disorder prediction 679 704 - -
Vimu1g02714 755 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 173 538 - -
Vimu1g02714 755 Gene3D Cysteine proteinases 237 544 - -
Vimu1g02714 755 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 240 536 IPR028889 -
Vimu1g02714 755 MobiDBLite consensus disorder prediction 582 609 - -
Vimu1g02714 755 CDD Peptidase_C19E 239 534 - -
Vimu1g02714 755 MobiDBLite consensus disorder prediction 731 755 - -
Vimu1g02714 755 Pfam Ubiquitin carboxyl-terminal hydrolase 273 533 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02714 Vimu-Chr1 39137868 39144286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02714 218 541 Miscellaneous Gene Families AT4G31670 74.850 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02714 K11855 - gmx:100799652 911.368