Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02713 ATGGAACACAGTTTGAAAAGAAAGTCTCCAGAAAATGAAGACTTTTTACACTTGAACGGCTTTTCTCTGGATGACCTTAATGAAGATCTCTTAGAGAGGGTGCTTTCATGGCTACCAACTTCCTCCTTCTTCCGCCTTACTTCTGTCTGCAAGAGATGGAAGTCAGCTGCTGCTTCTGTGAGTTTCAAGCTTGCCTGCTCACACATTCCCTCAAGAGATCCTTGGTTTCTGATGGTTTCTCCCAGCCTCAACCAATCCATTGTCTTTGACACTGCTGAAAACAGTTGGAAAAAACTCAATCACTTGCGTCTTCCGCTCGAAGACTCTAACATAAACTGCATGCCTGTTGCAGCATCTGGTGGCCTGGTTTGCTACCGCAAACTCTCAGGAAACTTTATTGTATGCAATCCAGTAACCGGATCCTGTAGTGAACTCCCTCCATTGCATTTCCCCTCAGAAAATCAGCCTCTCAATGCCGTTGTGATGAGTACAACTTTCAGAGATCAAATCTCCTACAAGATTGTGTTAGTCTTCGGTGAACTCCCTAATCTTTTGTTCAAAGTCTATGACTCTAGCTCTTGCTGTTGGGAAGATGAGACTGCTCTGAGGAGGGAGGTTGATGACAATTCCATTGATTGTGATTCAACCGATGATGATGACAATGTTGTGTACTTCCTTAGTAAGGCTGGAACAGTTGTGGCAAGTAGCATGCAGAGGAGCCCATCTAAGCAATATTCCTCGGTCATTACCACCAAAGATGGTGAGGAAATGGTGTATTTCCTCAGCTCCTCAGGGACAGTAGTAGCTTGCAATTTGACATCCAAAGGCTTTTTTGAGTATCCGAGGTTGTTGCCTGTTTTCAGTGAGTACTCCATTGACATTGTGGAGTGTGGTGGTGAGATGCTGGTTGTTTTGTTATCAGAATTCTTGGAGAGCACAAGTCTTAGGGTGTGGAAATATGATGACACAAATAGATGCTGGCAACAGATTGCTGTAATGGCTGCAGCAATGTCTCAAGAATGGTATGGAAAGAAAGCAGATATTAACTGTGTTGGTGCTGGCCATCAGATACTTATATGCTTGAACTCTCCTCAGCTATGCACTTACGTTCTCTGTGATTTGGTGACCAACACATGGACAGAGTTACCGAAATGTTGCATGAATGGAGAAGTCATGGAGTTCATGTCTGCATTTTCATTTGAGCCCAGGATAGAGGCTTGTGTATGA 1227 0.4385 MEHSLKRKSPENEDFLHLNGFSLDDLNEDLLERVLSWLPTSSFFRLTSVCKRWKSAAASVSFKLACSHIPSRDPWFLMVSPSLNQSIVFDTAENSWKKLNHLRLPLEDSNINCMPVAASGGLVCYRKLSGNFIVCNPVTGSCSELPPLHFPSENQPLNAVVMSTTFRDQISYKIVLVFGELPNLLFKVYDSSSCCWEDETALRREVDDNSIDCDSTDDDDNVVYFLSKAGTVVASSMQRSPSKQYSSVITTKDGEEMVYFLSSSGTVVACNLTSKGFFEYPRLLPVFSEYSIDIVECGGEMLVVLLSEFLESTSLRVWKYDDTNRCWQQIAVMAAAMSQEWYGKKADINCVGAGHQILICLNSPQLCTYVLCDLVTNTWTELPKCCMNGEVMEFMSAFSFEPRIEACV 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02713 408 Pfam F-box domain 23 63 IPR001810 GO:0005515
Vimu1g02713 408 SMART fbox_2 26 66 IPR001810 GO:0005515
Vimu1g02713 408 Gene3D - 75 393 IPR015915 GO:0005515
Vimu1g02713 408 PANTHER BNACNNG10540D PROTEIN 254 407 - -
Vimu1g02713 408 SUPERFAMILY F-box domain 19 103 IPR036047 GO:0005515
Vimu1g02713 408 SUPERFAMILY Galactose oxidase, central domain 86 382 IPR011043 -
Vimu1g02713 408 CDD F-box_AtFBW1-like 24 62 - -
Vimu1g02713 408 Gene3D - 17 62 - -
Vimu1g02713 408 ProSiteProfiles F-box domain profile. 20 65 IPR001810 GO:0005515
Vimu1g02713 408 FunFam F-box only protein 13 18 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02713 Vimu-Chr1 39134366 39135592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02713 - - vun:114195471 787.334