LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g02710	ATGGAGGAACAACACCACCAACAACCTAAACCCAACAACATCAACGCTTCCGACGCCGACCCTTTCCTCTTAAACTACACACCTTCGGATCTCCGAACCGCTTCGGAGTTTCTCGCCACGTGGCTCCCCTTCCTCTCCCGAGATCTCTGCGCGCGCTGCACTCAATCTCTCTCCGATCGTATTCAATCCATCGACCCAGGTGAAGTGCCCCAAAACGACAGCCCCAATGAACAAAACGACGCTGAAGATAACTGCGACACGCATTCGCTGGGGAGTTGGAAAGACGGAGCGGAGGTGAATTCCTGTGTGGAGACTCCGAGCCAGAGAGTTTGTTGGGCCGACATGGCCCAAGAAGATGATGAGTTTGGCGAAGAAGAAAACAACAACAATGGGATTAATGTTGTTATGGGTAATTCGAATGATGCTGCTGATGTGGGTGTAGCTGTGGCTGAGAAGCCTACTTTGCCCAGGGAGCAGAGGGAGTACATTAGGTTCATGAATGTGAGGCGCAAGAAGGACTTTATCTGCTTTGAGAGGGTTAATGGGAAGCTTGTGAACATTCTTGAAGGGCTTGAACTCCACACAGGGATTTTCAGTCTTGCTGAACAGAAAAGGATTGTCAATTATGTTGCTTCATTACAGGAGATGGGGAAAAGAGGAGAATTGAAAGAGCGGACATTTTCTGCTCCCCAAAAGTGGATGAGGGGCAAGGGACGACAAACCATACAATTTGGGTGCTGTTACAATTATGCAGTGGATAGAGATGGTAACCCACCTGGTATTCTTCCACATTCAATGGTTGATCCTTTACCTGATCTTTTCAAAGTCATCATCCGACGACTGATCAAGTGGCATGTACTACCTCCTACTTGTGTGCCAGACAGTTGTATTGTTAATATATATGAAGAAGGGGACTGTATACCTCCACACATAGATAACCATGACTTTGTTCGACCATTTTGCACTGTCTCATTTCTTAGCGAGTGCAATATAGTTTTTGGATCCAACTTGAAGATTATAGGTCCTGGTGAATTTGATGGTTCGATTGCTATTCCATTACCTATGGGATCTGTACTTGTCTTGAATGGAAATGGAGCTGATGTAGCTAAGCACTGTGTGCCAGCAGTTCCTGCAAAAAGGATATCGATCACATTTAGAAGAATGGATGAGTCAAAGAGGCCTTTTGGGTATGTTCCTGAACCTGATCTTCAGGGAATCCAGCCATTGACATATGAAGTTGAGCAGGAAAAGAAATCAGGTGGACACAGATCTGGTCGTCATGTGAGGAGACAAAGAGGGAGAGGAGGTGGCAGGAATGATGCAATGGGATTTGCATCTAGAAATGATAGGTTCTCAGAGCACCGCGACTCGAATCATAATACACCCAGATCGGGAAATAGGTGGAGTAGAAAGCATTCAGCATATTTTTCTGGGTTGAGACTTGCAGCAGCTGGAACATATTCGAAATTGCTTGCTTGTGAAAAGGTGGTGTAA	1494	0.4592	MEEQHHQQPKPNNINASDADPFLLNYTPSDLRTASEFLATWLPFLSRDLCARCTQSLSDRIQSIDPGEVPQNDSPNEQNDAEDNCDTHSLGSWKDGAEVNSCVETPSQRVCWADMAQEDDEFGEEENNNNGINVVMGNSNDAADVGVAVAEKPTLPREQREYIRFMNVRRKKDFICFERVNGKLVNILEGLELHTGIFSLAEQKRIVNYVASLQEMGKRGELKERTFSAPQKWMRGKGRQTIQFGCCYNYAVDRDGNPPGILPHSMVDPLPDLFKVIIRRLIKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKIIGPGEFDGSIAIPLPMGSVLVLNGNGADVAKHCVPAVPAKRISITFRRMDESKRPFGYVPEPDLQGIQPLTYEVEQEKKSGGHRSGRHVRRQRGRGGGRNDAMGFASRNDRFSEHRDSNHNTPRSGNRWSRKHSAYFSGLRLAAAGTYSKLLACEKVV	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g02710	497	Gene3D	-	175	393	IPR037151	-
	Vimu1g02710	497	MobiDBLite	consensus disorder prediction	61	87	-	-
	Vimu1g02710	497	MobiDBLite	consensus disorder prediction	1	21	-	-
	Vimu1g02710	497	ProSiteProfiles	Fe(2+) 2-oxoglutarate dioxygenase domain profile.	292	389	IPR005123	-
	Vimu1g02710	497	PANTHER	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED	28	422	IPR044842	GO:0003729\|GO:0006402\|GO:0032451
	Vimu1g02710	497	Pfam	2OG-Fe(II) oxygenase superfamily	192	386	IPR027450	-
	Vimu1g02710	497	SUPERFAMILY	Clavaminate synthase-like	187	388	-	-
	Vimu1g02710	497	MobiDBLite	consensus disorder prediction	447	461	-	-
	Vimu1g02710	497	MobiDBLite	consensus disorder prediction	415	469	-	-
	Vimu1g02710	497	MobiDBLite	consensus disorder prediction	61	78	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g02710	Vimu-Chr1	39116588	39120447	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g02710	K10767		-	gmx:100797674	787.719