Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02682 ATGGTGAAACTTTTTGTTTTTGTTTCAAGCTGGTGGCAGCATTCAGCAAATTTAGCGAGTTATGAACAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAGATGCAATCCATGAGAAAGAGGGCAAATCAAGAAATGGAAGCAAAGGTAACGAAGACTGTCAATGTATTGCTCATAGGGTGTTCTATGGATTATTGAGATCAGATGTTACGTGCATGACCTGTGGATTCACCTCAACAACCTATGATCCTTGTGTTGACATTTCACTTAACTTGAACACCAGTGTCTCTTCAACAGAAAACGGTAAAAAGCTTAACAAACGGAATGACGATGGAAGTATGTCTACACTTTCAGGTTGTTTAGATTTGTTCACAAGGCCAGAGAAGTTGGGGTCAGACCAGAAACTTTACTGCCAGAATTGTCAGGAAAAGCAAGACTCTTTGAAGCAAATGTCCATTAGAAAGCTTCCATTAGTACTTAGTTTACACGTGAAACGATTTGAGCACTCTTTTGTCAAAAAGTCTTCAAGAAAAATAGACCACTACCTACACTTCCCATTTTCCTTAGACATGTCTCCATATTTGTCCTCCTCAATCCTCAGAGCCAGATATGGAAATAGAATTTATTCTTTTGGGGCTGATGAATCAGATATGCTTTCTGAGTTTGAAATTTTTGCTGTGGTGACACATTCGGGTACGCTTGAATCCGGCCATTATGTTTCGTTCGTGCGTATAAGGAATCAATGGTACAAATGTGATGATGCTTGGATAACTGAGGTTGATGAAGCTACAGTTAGAGCTTCACAGTGTTACATGATTTTCTATGCTCAGAAAACTTTGTACAATAAAGCAAATGAAGACCAGAGTCACGCTCCAAATTCCCCTGGAAGAGAGCTATATTTTCCTATTGCTGGTTGTTGCTAG 924 0.3939 MVKLFVFVSSWWQHSANLASYEQQDAHEFFISMLDAIHEKEGKSRNGSKGNEDCQCIAHRVFYGLLRSDVTCMTCGFTSTTYDPCVDISLNLNTSVSSTENGKKLNKRNDDGSMSTLSGCLDLFTRPEKLGSDQKLYCQNCQEKQDSLKQMSIRKLPLVLSLHVKRFEHSFVKKSSRKIDHYLHFPFSLDMSPYLSSSILRARYGNRIYSFGADESDMLSEFEIFAVVTHSGTLESGHYVSFVRIRNQWYKCDDAWITEVDEATVRASQCYMIFYAQKTLYNKANEDQSHAPNSPGRELYFPIAGCC 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02682 307 Gene3D Cysteine proteinases 2 284 - -
Vimu1g02682 307 Pfam Ubiquitin carboxyl-terminal hydrolase 7 275 IPR001394 GO:0004843|GO:0016579
Vimu1g02682 307 SUPERFAMILY Cysteine proteinases 5 288 IPR038765 -
Vimu1g02682 307 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 277 - -
Vimu1g02682 307 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 278 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02682 Vimu-Chr1 38748522 38749744 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02682 7 277 Miscellaneous Gene Families AT2G24640 26.786 3.66e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02682 K11366 - gmx:100806347 565.459