Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02670 ATGAGTGTCCATTCTCACGCTCTTCTCGACCCTTCTAATCGGAAATATGCACCAAGCAAGGGAAGTGTTAGAGCTGCGTATTGGCCTTCGGGTGATGATCTTTCACCTTCTTCCATCGACACAAAGTACTACACTCACATCTACTATGCCTTCATCCAACAAGATCCTCAATTTTTCCACCTTAGCGTCACCGAATCCGAGAAAAAATGGATTCCACAATTCATCACCGGGCTCCGCCACCGTTACCCGCCGGTCAAGACTCTCTTGTCGATTGGCGGAGGTGGCAGCAACTCCACCGCCTTCTCCCTCATGGCCAGCACCCAACACAACCGACAAGTGTTCATCAACTCCACCATCCACGTGGCGCGCCAATTCGGATTCGACGGTCTCGATTTGGACTGGGAGTTCCCAGAAAACGAGGTCGACATGTCTAACCTAGGTATCTTGTTTCGTGAATGGCATCAAGCTATAACATTGGAAGCACAAGCTTGCAGAAAACCGCGTCTCCTTTTAACCGCCGCTGTTTATTACGCTTCCACCATTAAACTTATCGGTAATGGGCCAAGAACATATCCGGTTCAGGCCATTCGCGATTACTTGGATTGGGCCAGCCCAATGTGCTTTGACTACCATGGGACTTGGGACAATTTTACAGGCTTCAATGCTGCTTTGTATGATCCAAACTCCAACATCAGTACCCGGTACGGAATCGGGTCTTGGATCGGAGCGGGTGTGCCCGGGCATAAGTTGGTTATGGGTTTACCATTATACGGACGGGCATGGGCGCTCCGAGATCCGAATGTTAATGGGGTCGGAGCAGAGGCTGTTGGGGAAGCCACTGATACTGATGGTACAATGGATTATGATGAAATTTTGGTGTTCAACAAAGAAAACGGTGCCACTGTTGTGTACGATGATGTAGCCGTGGGTTTTTACTCTTATGCGGGTACTACTTGGATCGGGTATGATGATGGAGCCTCCATAAAGAAGAAGGTTCAGTTTGCTAGGGCTTGGAGCTTGAAAGGCTATTTCTTTTGGGCTCTCGGAAAGGATAAGGATTGGAGCATCTCAAGACAAGCTTCAAATGCATGGGGACATTGA 1101 0.4886 MSVHSHALLDPSNRKYAPSKGSVRAAYWPSGDDLSPSSIDTKYYTHIYYAFIQQDPQFFHLSVTESEKKWIPQFITGLRHRYPPVKTLLSIGGGGSNSTAFSLMASTQHNRQVFINSTIHVARQFGFDGLDLDWEFPENEVDMSNLGILFREWHQAITLEAQACRKPRLLLTAAVYYASTIKLIGNGPRTYPVQAIRDYLDWASPMCFDYHGTWDNFTGFNAALYDPNSNISTRYGIGSWIGAGVPGHKLVMGLPLYGRAWALRDPNVNGVGAEAVGEATDTDGTMDYDEILVFNKENGATVVYDDVAVGFYSYAGTTWIGYDDGASIKKKVQFARAWSLKGYFFWALGKDKDWSISRQASNAWGH 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02670 366 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 127 135 IPR001579 GO:0004553|GO:0005975
Vimu1g02670 366 SUPERFAMILY Chitinase insertion domain 257 322 IPR029070 -
Vimu1g02670 366 SUPERFAMILY (Trans)glycosidases 24 352 IPR017853 -
Vimu1g02670 366 FunFam Class V chitinase CHIT5b 256 322 - -
Vimu1g02670 366 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 22 366 IPR001223 GO:0005975
Vimu1g02670 366 Pfam Glycosyl hydrolases family 18 26 351 IPR001223 GO:0005975
Vimu1g02670 366 CDD GH18_plant_chitinase_class_V 23 357 - -
Vimu1g02670 366 SMART 2g34 22 351 IPR011583 GO:0008061
Vimu1g02670 366 PANTHER CHITINASE 19 364 - -
Vimu1g02670 366 Gene3D Glycosidases 37 352 - -
Vimu1g02670 366 Gene3D - 256 322 IPR029070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02670 Vimu-Chr1 38588026 38589218 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02670 23 364 Glycoside Hydrolase AT4G19810 43.605 6.63e-95 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02670 K01183 - gmx:100787511 663.299