Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02652 ATGCTTGAGGAAGGAAGTAAGAAAGGGGGAAATTTGAGGTTGTTTCCTCCTGCAGATCGTCCTACATTGGAGTTCCACTTGAACACTATGATGCAAGAGATTGCTGCGGCACTGCTTATGGAGTTTGAGAAATGGGTGCTTCAGGCAGAATCTTCCGGAACCATTCTCAAGACACCTTTAGATTCTCAAGCTAGTCTCAGCTCAGAGGAGGTTATCAAGGCCAAAAAGAGAAGGCTTGGGCGTGCGCAGAAGACCATTGGTGATTACTGTTTGCTGGCAGGGTCCCCTGTCGATGCCAATGCTCATTATTCTACTGCATTGGAACTTTCCAGGTTAACTGGTGATTACTTCTGGTATGCTGGAGCATTGGAGGGTAGTGTCTGTGCCTTGCTGATTGACCGAATGGGCCAAAAAGATTCAGCACTGGAAGAAGAAGTTAGATATCGTTATAATAGTGTGATAGTGAATTACAAGAAGTCACAAGATAATGCTCAGCGGAGAGAGCTGGCCAAGGAGGTGGTGGAGTTGTTGACGACAGCTGCAGATGGTGCTAAATCTTTAATTGACGCAAGTGATAGACTCATATTGTATATTGAAATAGCTCGTCTGTATGGAAGTCTGGGATACCATAGAAAAGCTGCATTTTTCTCAAGGCAGGTTGCACAGCTATATCTGCAGCAAGAAAATAGATTGGCTGCAATTAGTGCTATGCAAGTTTTGGCAATGACCACCAAAGCTTATCATGTTCAAAGTAGATCATCAATCTCTGATAATTCTTTGCACAGTAATGGAATTGTATCAAATCATGCTGATAGTGGGAAAACAAACCACCAATCAGCAGTCTCACTATTTGAGTCTCAATGGAGTACCCTCCAGATGGTTGTATTAAGAGAAATTCTACTTTCTGCTGTCCGTGCTGGTGATCCTCTTACTGCATGGAGTGCAGCAGCACGACTCCTTAGATCGTACTATCCTCTAATAACACCTGCTGGGCAAAATGGCCTTGCTAATGCACTTTCAAATTCAGCTGACAGGCTGCCACCAGGGACTCGTTGTGCTGATCCTGCTTTACCCTTTGTGAGAGAAGATTGGTGGGCTGGTGCTGCTCCTTCTGGACCTTTCATTTATACACCATTCAGTAAAGGAGAGTCTAATAATACCAAGAAGCATGAGCTTATTTGGATTGTTGGAGAACCTGTTGAGGTCTTGGTGGAATTAGCAAACCCATGTGGCTTTGATTTAAGGGTTGATAGCATCTATCTATCCGTGCATTCTGGGAATTTTGATGCTTTCCCCGTAAGTGTAAGCCTTGTACCAAATTCTTCAAAAGTGATCACCTTATCTGGTATTCCAACATCAGTGGGACCAGTTTCAATTCCTGGGTGCATTGTTCACTGTTTTGGTGTTATTACTGAACATCTGTTTAAAGAGGTTGATAATCTACTCCTTGGGGCCTCACAAGGGCTGGTCCTTTCTGACCCTTTTCGATGCTGTGGATCTCCAAAGTTGAAAAATGTGTCTGTTCCTAATATTTCTGTAGTACCACCACTTCCATTATTGGTATCACATGTTGTTGGAGGTGATGGAGCCATCATTTTATATGAAGGTGAAATTCGGGATGTGTGGATTCGCCTGGCTAATGCCGGTACTGTTCCAATTGAACAGGCCCATATTTCATTGTCCGGGAAAAATCAAGATTCTGTAATTTCATATTCTTCTGAAACATTGAAATCTTGCCTCCCTCTGAGACCTGGAGCAGAAGTTACATTCCCTGTGACCTTGAGAGCCTGGCAGGTTGGCTTGGTGGATGCAGATGCTGGTGCAGGGAAGACTGTCTCAGGGAACAATACGAGGCATTCCAAAGATGGAAGTAGCCCATCGCTGTTGATCCACTATGCTGGTCCGATGAAAACCTCTGAAGAAACTCCAACAAATGGATCTACTGTGCCCCCTGGCAGAAGGCTTGTTGTTCCTCTGCAGATTTGTGTTTTGCAGGGCTTGTCCTTTGTCAAGGCTCAGCTTCTTTCAATGGAGTTTCCTGCTCATGTTGGTGAAAGTCTTCCGAAGTTGGATGATGTTAATAATAAGTCTACTGATGAACATGTTAACTCAGAGACAAAAATGGACAGATTGGTGAAAATAGATCCTTTCAGAGGAAGTTGGGGGCTTCGATTCCTTGAACTCGAGTTATCTAATCCAACTGATGTTGTGTTTGAAATCAATGTCTCTGTCAAACTGGAGAACTCAAGCAGTGAGAACAACCATTTTTCTGATCAGGGTGCAACTGAATATGTCTATCCTAAAACAAGAATTGATAGAGATTGCTCAGCGAGGGTTCTAGTGCCTCTTGAGCATTTTAAATTACCTGTTCTTGACGATTCCTTTTTTATGAAGGATACCCAGTTAGATGGGAATGGAGGAAGAAATGCATCCTTCTCAGAGAAGAACACCAAAGCTGAACTAAATGCTTGCATCAAGAACCTTATATCTAGGATTAAGGTTCGATGGCAATCAGGACGGAATAGCTCTGGGGAGTTAAATATCAAAGAAGCTATCCAGGCTGCTCTCCAAACATCAGTCATGGATATTTTACTTCCAGATCCATTGACGTTTGGCTTCAGGCTTGTTAGAGATGGTTCTGAATCAACAACAACTGATCCTGATAAAGAATCTGCGTCTGCTGCTTCCAAAGGTTCCGTTATTGCACATGAAATGACAGCAATGGAAGTTCTGATGGTACCAAAGCGACTGTTCTATGGACGGGTAACTCCTTCTTTATCAAGTGTTCTGAGTGACATTGCTATGGAAATTCCCCCACTTCAACAAATTAGACACTCGTTCTGCCTTCATTTTCTTGTCCCTGGAGAGTATACACTACTTGCTGCAGCAGTGATTGATGATGCAAATGACATTCTTCGTGCTCGTGCAAAGACCACCTCGGCTTCTGAGCCAATTTTCTGTCGTGGACCACCCTATCACGTTCGTGTCCTTGGAACTGCATGA 3003 0.4349 MLEEGSKKGGNLRLFPPADRPTLEFHLNTMMQEIAAALLMEFEKWVLQAESSGTILKTPLDSQASLSSEEVIKAKKRRLGRAQKTIGDYCLLAGSPVDANAHYSTALELSRLTGDYFWYAGALEGSVCALLIDRMGQKDSALEEEVRYRYNSVIVNYKKSQDNAQRRELAKEVVELLTTAADGAKSLIDASDRLILYIEIARLYGSLGYHRKAAFFSRQVAQLYLQQENRLAAISAMQVLAMTTKAYHVQSRSSISDNSLHSNGIVSNHADSGKTNHQSAVSLFESQWSTLQMVVLREILLSAVRAGDPLTAWSAAARLLRSYYPLITPAGQNGLANALSNSADRLPPGTRCADPALPFVREDWWAGAAPSGPFIYTPFSKGESNNTKKHELIWIVGEPVEVLVELANPCGFDLRVDSIYLSVHSGNFDAFPVSVSLVPNSSKVITLSGIPTSVGPVSIPGCIVHCFGVITEHLFKEVDNLLLGASQGLVLSDPFRCCGSPKLKNVSVPNISVVPPLPLLVSHVVGGDGAIILYEGEIRDVWIRLANAGTVPIEQAHISLSGKNQDSVISYSSETLKSCLPLRPGAEVTFPVTLRAWQVGLVDADAGAGKTVSGNNTRHSKDGSSPSLLIHYAGPMKTSEETPTNGSTVPPGRRLVVPLQICVLQGLSFVKAQLLSMEFPAHVGESLPKLDDVNNKSTDEHVNSETKMDRLVKIDPFRGSWGLRFLELELSNPTDVVFEINVSVKLENSSSENNHFSDQGATEYVYPKTRIDRDCSARVLVPLEHFKLPVLDDSFFMKDTQLDGNGGRNASFSEKNTKAELNACIKNLISRIKVRWQSGRNSSGELNIKEAIQAALQTSVMDILLPDPLTFGFRLVRDGSESTTTDPDKESASAASKGSVIAHEMTAMEVLMVPKRLFYGRVTPSLSSVLSDIAMEIPPLQQIRHSFCLHFLVPGEYTLLAAAVIDDANDILRARAKTTSASEPIFCRGPPYHVRVLGTA 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02652 1000 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 170 341 IPR013935 -
Vimu1g02652 1000 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 63 179 IPR013935 -
Vimu1g02652 1000 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 370 566 IPR013935 -
Vimu1g02652 1000 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9 166 994 IPR013935 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02652 K20306 - gmx:100784850 1771.9