Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02648 ATGAAAAACAGTTTGGACAAAATGTGGAGAGAGAGAGCATTGTTCCTCGTACTGCTACTTCTAGTCCACCATATTTGTGCAACCAAGGACGACAAAAAACACCTTTGTCCCCCTTCTTCCTGTGGCAATATCACCCACATCTCTTATCCATTTCGATTACAAGGTGACCCAGAGAATTGTGGTGACGAAAGGTACGAGCTTGGTTGTCAGAATAATGTTACGGTGTTGTATCTGCACTCTGCACATTATCATGTGCAGGCAATCAACTACAACAACTACACAGTGAGAGTGGTTGATCCTGCACTTCAACATCACAATTGCTCCTCCCTTCCTCTCCATTCCCTCTCTCGCTCTAATTTCTCTCATACTTACACGCACCGCATGGGTCCATACCAAGCCTCTTATGATAATATGGAATCTCTGAGTTTCGAGCATATAGTGTTTCTGAACTGTAACCATTCAGTGAGAGAGAATGGGAAGTACTTGGAGAGTGGTGAGTGCGTGAAGTGGGACTCAAAGGGCTATGCATATGCTGTTGTCGGTGACCTAAAAGCTGAGGACTTGGAAGTTGGGTGTGACGTAAAGCTTGTTGCTCCATTGGATATATAG 609 0.445 MKNSLDKMWRERALFLVLLLLVHHICATKDDKKHLCPPSSCGNITHISYPFRLQGDPENCGDERYELGCQNNVTVLYLHSAHYHVQAINYNNYTVRVVDPALQHHNCSSLPLHSLSRSNFSHTYTHRMGPYQASYDNMESLSFEHIVFLNCNHSVRENGKYLESGECVKWDSKGYAYAVVGDLKAEDLEVGCDVKLVAPLDI 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02648 202 PANTHER OS01G0690200 PROTEIN 11 199 - -
Vimu1g02648 202 Pfam Wall-associated receptor kinase galacturonan-binding 36 99 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02648 Vimu-Chr1 38278164 38279342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02648 15 116 Receptor kinase-like Gene Family AT1G66910 30.435 3.89e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02648 - - vra:106763727 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02648 1 38278164 38279342 Vimu1g02648 1 38278164 38279342 ECH