Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02635 ATGAGAAAGAGTTTGGACATGATGAGGAGAGTATTGGTGATACTGCTACTTATTCTAATCCACCATATTTCTGCTACCAAGGACCACCATGAACACCGTTGTCCACCTTCTTCCTGTGCCAACATCCTCAACATCACTTATCCATTTCGATTACAAGCCGACCCAGAGAATTGTGGTGACAAAAAGTACGAGCTTGGTTGTCAGAATAATGTTACGGTGTTGTATTTGCACTCTGCACAGTATCATGTGCAGGCAATCAACTACAACAACTACACAGTGAGAGTGGTTGATCCTGCACTTCAACTCCATAACTGCTCCTCCCTTCCTCTCCGTTCTCTCTCTCGCTCCAATTTCTCTGATACTTACTCTTATCCCCGGGATCTATACCAAGCCGGTCTAAATGCGAATCTTAATTGGGAATTTCTGAGTTTCGAGCATATAGTGTTTCTGAACTGTAACCATTCTGTGAGAGAGAATGAGAAGTATGTGGAGAGTGGTGAATGCGTGAAATGGGACTCAAAAGGCTATGCATATGCGATGGGTGGAGACCTAAAAGCTGAGGACTTAGAAGTTGGGTGTGACGTGAAGCTTGTTGCTCCCACATCGTTCAGGACTTTCAATAACCATTCCTACGCTGACATTCAAAGGGCTCTCGCCTACGGATTTGAGATCTCTTGGTTCGATAGGAAGAACGTTGAAGGCGAGCAAAGAGCCGAGACAAAAGGGTTGAGAAAAGGTCTGAACAAGGTAGGGAACTGGCTGGCACATAAGGACAATGATAATTGGTTGAAGGACATTAGGGGTAACCTGAGTTTGGTGGCTACGGTAATCGCAACAATAACCTTTCAAATTGCTCTAAATCCACCAGGTGGTGTTAGACCGCCACAAGAGACTGGAGTAGTGGCTTGTCCAAAAGGGATGAACCCATGTCCTGGAGAATCTGTCCTAGCTTATACAATGGACGAACTTTACACAAGGTTCCTTATTTGCAACACTATATGTTTCATATCATCTTCAGCTGTTTGTCTCTGGCTTGTTAGTGGGCTCCCTCTAAACAACAGATTTTTCAACTGGCTTTTGTCAATAGGCATGTGCGTCACCATCTCTAGTCTCGCTCTTACCTACATGTATGGTGCTCAAATGGTCACCCCACAGCCTGTTTGGAGCACATCCACCTCCATGTTTGGAATTGTTATACTTGTGTGGTTAGCACTGCTGGGAGTCGTCGTTGTTGTTCATAGCCTGCGCCTGTTCGTTTGGATTTTCGCTAAACTGATTGGCAAACCTAAACAATGA 1296 0.4475 MRKSLDMMRRVLVILLLILIHHISATKDHHEHRCPPSSCANILNITYPFRLQADPENCGDKKYELGCQNNVTVLYLHSAQYHVQAINYNNYTVRVVDPALQLHNCSSLPLRSLSRSNFSDTYSYPRDLYQAGLNANLNWEFLSFEHIVFLNCNHSVRENEKYVESGECVKWDSKGYAYAMGGDLKAEDLEVGCDVKLVAPTSFRTFNNHSYADIQRALAYGFEISWFDRKNVEGEQRAETKGLRKGLNKVGNWLAHKDNDNWLKDIRGNLSLVATVIATITFQIALNPPGGVRPPQETGVVACPKGMNPCPGESVLAYTMDELYTRFLICNTICFISSSAVCLWLVSGLPLNNRFFNWLLSIGMCVTISSLALTYMYGAQMVTPQPVWSTSTSMFGIVILVWLALLGVVVVVHSLRLFVWIFAKLIGKPKQ 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02635 431 Pfam Wall-associated receptor kinase galacturonan-binding 34 97 IPR025287 GO:0030247
Vimu1g02635 431 Pfam Domain of unknown function 261 379 IPR026961 -
Vimu1g02635 431 PANTHER OS01G0690200 PROTEIN 11 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02635 Vimu-Chr1 38083562 38092269 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02635 263 396 Miscellaneous Gene Families AT1G34050 29.452 2.29e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02635 - - vra:106763727 385.571