Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02625 ACGTTTCGTTCTCGCTTGCGAAGACGAGCTTGGAGCAAGGTCACGATATTGCGGCCAGACGTAGTCCCGATGATGTTTGCCGTTGCCGGTGAAGCTGTTGACGGTGATAGTAGGGTCTTTCTCGCGCGAGAGGTTGAGCTTGAGGAGCGAGCAATGCAGTGGCCGGTTTTTGGTTCGTGGCCGGTTGTGGTTCTGGTTGCTTCTCATCGCCGGCGGCACCGAGTGGAGGAGGCTGTGCAGTTAAGCACGTCAAACGATCTTGGAGAAAACGTAGATAGCTATAGCAACATGTCTTTTGACCTGAACAGAGACCTTGCTGTATTGGTCTTGAAGTATTTTCATGACCAAAATTTTAAGGAAGCAGCACTGACGCTTGGTTGTGAAAGTGGGTTGTTCTTTGACATGAAGTATTTTGAGGAGATGGTGCTTAAGGGAAACTGGGATGAGGCTGAGAACTATCTTTTAGGTAACGATCGATACAAGGCCTTAGACATCCTATTGAAGGATCTGAAAATCTTTGCACAAGGGAATGAAAAGTTGATCAAAGACCTTTGTCACCTTTTGGTAGTTGATAATATAAGGGAAATTAAACCAACATATCGAGATGCAATTTCTGCGAGGAAGAATCTGATATGTGAAATTAAGAAAATTATAATTCAACATCCTCTTTTAGCTGGTAAGCTAAAATTGCCAGACATCGAAATTCACAGACTACGCCATCTTCTGAATCAAAGCCTATTGCTGCATTTATTTATATTTTACTCAACATCTCATCATTTTCTTATTAAGAGAAACTGCAATGGAGTTTTGGGAGATGTCAAAAAGGTTTCAATTGAAGAATCCCGTAACAATTCATTTCAGTGGCAGTACTTGCAGCTCCCTAAGCATCCTCAAGTAAAAAGGCAGATTGTTAAACTGGCTTACAACAATTCTGGGAATTCAATTCTGGCATTGGCATCCAATGGTATTCATCTGGTTTGGCTCTGGCCACGCACTGGCTTTAACTTGGATGGCAAGGCTAGTGTTCAGGTTTGTCCTCAGTTGCAGCAACCAAAGGATGGCTTCCAAGCTATGATCAATGAACTTTCAACTGTCAAATGTGCAAACCCAGTTTCCTGTTTTGCATTATCAAGACAGGGTGGATATGTGATATCAACATCAGGGGGCATGATCTCCTTGTTCAACATGGTCTCCTATAAGACTCTGAGAACCATCATGTCTCCACCGCCTATGGTAACATGTCTTGCTTTCTACCCTGAAGATAACAATATATTTGGTATTGGCTTTGATGACTCCAGCTTAAGTATATATAATGTTCGTGATGATCAGGTTTTACAAAAGCTTGAGGGTCACTGCAAAAGAGTTACCACTCTTGCCTTCTCAAGCACTTCCAATATTCTTATATCTGCTGATGCAAATGCTCAGATCATTGTATGGAATACAAATGGGTGGAAAAAGCTGAGAGATAAAAAGTTGCAAATACAAGAAAACCACATGATAGAATCTGAAACTCAGATTCAGTTGCATCCAGATCAAACGAAATTCCTTGTTGTATATTTTGGTCATGTTGCAATCTATGAAATAACAGAACTAAGATGTGTCAATGAGTGGGTTCCAGAAATTCCACAGCTTATCTCTCAAGCAACCTTCTCATCAAATGGTCATATTGTGTATTCCATTTTGGTTGATGGGACAGTCACAATATTTGATGCAACAAATTTTGAAATTCATTGTAGGATTTCTACATCGTCTTATCTTCCTCCAATTTCAAGCTTGAGCATCTACCCAATTTCCATTGCTGCACATCCACAGAAAGCAAACCAGTTTGTTGTGGGGCTCACAGATGGTAGTGTTTATGTGTTTGAGCCGCAGAAACCAGGTGGTGATTGGATAAAGAATCACTGA 1905 0.4115 TFRSRLRRRAWSKVTILRPDVVPMMFAVAGEAVDGDSRVFLAREVELEERAMQWPVFGSWPVVVLVASHRRRHRVEEAVQLSTSNDLGENVDSYSNMSFDLNRDLAVLVLKYFHDQNFKEAALTLGCESGLFFDMKYFEEMVLKGNWDEAENYLLGNDRYKALDILLKDLKIFAQGNEKLIKDLCHLLVVDNIREIKPTYRDAISARKNLICEIKKIIIQHPLLAGKLKLPDIEIHRLRHLLNQSLLLHLFIFYSTSHHFLIKRNCNGVLGDVKKVSIEESRNNSFQWQYLQLPKHPQVKRQIVKLAYNNSGNSILALASNGIHLVWLWPRTGFNLDGKASVQVCPQLQQPKDGFQAMINELSTVKCANPVSCFALSRQGGYVISTSGGMISLFNMVSYKTLRTIMSPPPMVTCLAFYPEDNNIFGIGFDDSSLSIYNVRDDQVLQKLEGHCKRVTTLAFSSTSNILISADANAQIIVWNTNGWKKLRDKKLQIQENHMIESETQIQLHPDQTKFLVVYFGHVAIYEITELRCVNEWVPEIPQLISQATFSSNGHIVYSILVDGTVTIFDATNFEIHCRISTSSYLPPISSLSIYPISIAAHPQKANQFVVGLTDGSVYVFEPQKPGGDWIKNH 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02625 634 SMART WD40_4 441 480 IPR001680 GO:0005515
Vimu1g02625 634 SMART WD40_4 398 438 IPR001680 GO:0005515
Vimu1g02625 634 SMART WD40_4 358 395 IPR001680 GO:0005515
Vimu1g02625 634 SMART WD40_4 588 622 IPR001680 GO:0005515
Vimu1g02625 634 SMART WD40_4 530 570 IPR001680 GO:0005515
Vimu1g02625 634 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 448 480 - -
Vimu1g02625 634 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 157 247 IPR027728 GO:0006355
Vimu1g02625 634 SUPERFAMILY WD40 repeat-like 363 624 IPR036322 GO:0005515
Vimu1g02625 634 Gene3D - 366 629 IPR015943 GO:0005515
Vimu1g02625 634 Pfam WD domain, G-beta repeat 443 480 IPR001680 GO:0005515
Vimu1g02625 634 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 489 IPR001680 GO:0005515
Vimu1g02625 634 ProSiteProfiles LIS1 homology (LisH) motif profile. 101 133 IPR006594 GO:0005515
Vimu1g02625 634 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 132 154 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02625 Vimu-Chr1 37972214 37978752 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02625 - - vun:114195532 657.521