Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02572 ATGGATCGGATTGGTCCATTTTGCCACCTTACGTCTAATATCAAACCCAAATCTCTGAACTGTGGAACCACGATTCTTGTATCAGTGGCTACACGCTTCAAACCCTTAGTGAATCGTGAAATGGGTTGGAAAGCAGCTGAAAAACTCATTAGGCACTGGAAAGTTCTCAGAGGGGATAATGTTATGATAATAAGAGGCAAAGATAAGGGTGAGACGGGGACCATTAAGCGTGTTATTCGCTCTCAGAATCGTGTCATTGTTGAGGGTAAAAATCTGGTGAGGGATGAACACAACACTCCCCATCATAATTTGGGCATTGCTAGTCCAATTTTTGAAGTGTCTGTATTTTCAATTCCATTACCGGTGAAGAAGCATATTAAGCAAGGGCAAGGCCATGAAGGGGGCATCTTTTCTGTCGAAGCCCCAATCCATGTCTCCAACGTGCAAGTTCTTGACCCAGTGACAGGGTATGCACATTTGTTAAAGAGCATAGCTTGGGATTGCATCTTCTGGGTTGGAGTAAAATATCTTGAAGATGGTACTAAAGTCAGAGTATCCAGAGGAATAGGAGCATCTGAGTCTATAATCCCTCGTCCTGAGATCTTAAAGATAAGAACTACCCCAAGACCTACAGTCCTTGGTCCTAAAGATACTCCAATGGATCTTGTGCTAGAGAAGACTTACGATGCTAAAACAGGAAGGGGAATGCCTGAGCTTTAA 720 0.4319 MDRIGPFCHLTSNIKPKSLNCGTTILVSVATRFKPLVNREMGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLVRDEHNTPHHNLGIASPIFEVSVFSIPLPVKKHIKQGQGHEGGIFSVEAPIHVSNVQVLDPVTGYAHLLKSIAWDCIFWVGVKYLEDGTKVRVSRGIGASESIIPRPEILKIRTTPRPTVLGPKDTPMDLVLEKTYDAKTGRGMPEL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02572 239 SUPERFAMILY Translation proteins SH3-like domain 50 157 IPR008991 -
Vimu1g02572 239 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 37 229 IPR003256 GO:0003735|GO:0005840|GO:0006412
Vimu1g02572 239 SMART kow_9 54 81 IPR005824 -
Vimu1g02572 239 CDD KOW_RPL26 58 150 IPR041988 GO:0003723
Vimu1g02572 239 Gene3D - 44 191 IPR014722 -
Vimu1g02572 239 Pfam KOW motif 57 88 IPR005824 -
Vimu1g02572 239 Hamap 50S ribosomal protein L24 [rplX]. 53 187 IPR003256 GO:0003735|GO:0005840|GO:0006412
Vimu1g02572 239 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 122 188 IPR003256 GO:0003735|GO:0005840|GO:0006412
Vimu1g02572 239 ProSitePatterns Ribosomal protein L24 signature. 58 75 IPR005825 GO:0003735|GO:0005840|GO:0006412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02572 K02895 - gmx:100499816 270.011