Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02569 ATGGGTGACAAGAAGAAAAAGGCTCAGATGTTTGTGAAACTAGTGTCTGCTGCCGGCACCGGATTTTTCTATGTAAAGAGGAAGCCAAGGCAGTTCACAGAGAAGCTTGAGTTTAGAAAATTTGATCCTAGGGTTAATCGTCATGTTCTGTTTACAGAGGCTAAGATGAAAGAAGTTGTCCTTGGAGAACCTTGTCAATTTGTTCAGGCCTTAAGTGAGTGGATATCAAATTGTTCACAGTATCCTGAGATGCGTGCAAACGTTTCTTGCCTCTTTATGTATCCAGATATTGTGATGCTCCCTTCAATATATCCACCAGTTTTCCTTCCAGCAAGAACATCCATCAAAGTAGTCTTACCAGCACCACTTACACCCATCAGAGCTGTTAGTACTCCTGGCCTAAAGACACCACTAACACCCTTCAATAGTTCTAAACATTCCTCAAAAACTCCTTGCTTTTTCATTTCCTACAATCAATATAACAGTCAAAATGTACAACAGTTCTAA 507 0.4024 MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKFDPRVNRHVLFTEAKMKEVVLGEPCQFVQALSEWISNCSQYPEMRANVSCLFMYPDIVMLPSIYPPVFLPARTSIKVVLPAPLTPIRAVSTPGLKTPLTPFNSSKHSSKTPCFFISYNQYNSQNVQQF 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02569 168 SUPERFAMILY Zn-binding ribosomal proteins 4 55 IPR011332 GO:0006412
Vimu1g02569 168 Pfam Ribosomal protein L33 12 55 IPR001705 GO:0003735|GO:0005840|GO:0006412
Vimu1g02569 168 Gene3D Ribosomal protein L33 3 71 IPR038584 -
Vimu1g02569 168 FunFam 50S ribosomal protein L33 1 57 - -
Vimu1g02569 168 PANTHER 54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL 4 61 - -
Vimu1g02569 168 NCBIfam 50S ribosomal protein L33 4 57 IPR001705 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02569 Vimu-Chr1 37125131 37125976 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02569 K02913 - gmx:100778721 116.701