Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu1g02550 | ATGCTCTCTCGTTCTCTGAAATCCCCTCATTCCCTCTTCTCCCTCCGTTTATTACCCTGTACTCCGAATCCAATCTCAACCCCAAACCCTATTCCTAACCTAAACCCTTCCTTCCCACCCTCCCCACACCGTCTCTTTTCTTCTTCATGGCTATCCGAACCGGGAAATCCAATCATCCAATGGCCCTCACTACCCAAACCAAACCCTCCTCCAAATTCCAACCCCAACCCTAACCCCGCACCCGACCCTACCTCTCCGAACCTAAACGCCTTCTCCCTCATTTCCAACCTCTTCACGGACCCTTCCGTCTCGCCCGGTCCGGTCCTCCACGCCCAACTCGACCGCTCCGCCATCGAACCGGACCCGGCTTCCCTGCTCGCCGTCTTCCACCGCTTTGGCTCGTCCCCCAAGCTCCTACACTCGCTCTTCCTCTGGGCCCAGACGCGACCCGGCTTCAGGCCCGACCCGAACCTCTTTGACGCCGTCGTCAATGCACTCGCAAAGGCAAGGGAGTTTGACGTCGCATGGAAACTCGTTCTCGATCACGTCGGTGGAGATGGGGAAGAAGAAAACGAAAGCTTGGTTTCCGTTAAGACCTTTGCCATCATGATTCGACGCTATGCTCGTGCAGGTATGTCCAAACTTGCAATCAGAACTTATGAATTTGCTAAAGATAACAAGTCCATTGTGGATTCTGGCTCAGAAATGAGTTTGTTTGAGATATTGATGGATTCACTTTGTAAAGAAGGGTCGGTGAGGGAAGCTTCAGAGTATTTCCTTTGGAAAAAGGAGTTGGACTTAAGTTGGGTTCCTTCTATTCGGGTTTATAACATAATGTTGAATGGATGGTTTCGATCGAGGAAACTTAAGCAGGGCGAGAGACTTTGGGCAGAGATGAAGAAGGAGAATGTGAGACCAAGTGTTGTGACATATGGTACCCTTGTGGAAGGATATTGCCGGATGCGACGTGTTGAAAAAGCACTCGAAACGGTTGGTGATATGAGCAGAGAAGGAATTGCACCAAATGCAATTGTATACAACCCAATAATTGATGCACTAGCAGAAGCTGGAAGATTCAAAGAGGCTTTGGGTATGTTGGAACGATTTCATGTTTTGGAAATTGGCCCTACTGACTCAACATATAATTCTCTCATAAAAGGGTTTTGTAAGGCTGCAGATCTTGTTGGTGCTAGTAAGATTCTTAAAATGATGATAAGCAGGGGCTTCATTCCAAGTCCCACTACCTATAACTACTTTTTTAGGTACTTTTCAAGATGTGGAAAAGTTGAGGAGGGGATGAACCTGTATGCAAAGTTGATTGAGTCTGGTTATACCCCAGACCGGTTAACTTACCATCTTTTGGTGAAAATGTTATGTGAAGAGGGGAAGTTAGACATGGCAGTTCAAGTTAGCAAGGAAATGAGGCATAATGGATATGACATGGACTTGGCTACCAGTACCATGTTAATTCATTTGCTCTGCAAAATGCATAGGTTGGAAGAGGCTTTTGCTGAATTTGAGGACATGATAAGAAAGGGTATAGTTCCTCAGTATCTCACTTTCCAGAGAATGAAAGCTGAGTTAAAGAGACAAGGTATGACTGAAATGGCTCAAAAGCTTTGCAAATTGATGTCTTCTGTTCCCTATTCTGGGAACTTGCCAAATACTTATGGTGGAGACAGAGAAGATGCTCTTACACGGAGAAAATCTATAATTCGGAAAGCTAAAGCATTTTCTGATATGCTGAAGGACTGTAAGGATCCCAGTGAACTTCGTCAGTATAGAAATTCATTAGAAAATGCTGTCTCAAGCGCAAAATCTATGATAGTGGAGATTGAGGGAAAATGA | 1848 | 0.4562 | MLSRSLKSPHSLFSLRLLPCTPNPISTPNPIPNLNPSFPPSPHRLFSSSWLSEPGNPIIQWPSLPKPNPPPNSNPNPNPAPDPTSPNLNAFSLISNLFTDPSVSPGPVLHAQLDRSAIEPDPASLLAVFHRFGSSPKLLHSLFLWAQTRPGFRPDPNLFDAVVNALAKAREFDVAWKLVLDHVGGDGEEENESLVSVKTFAIMIRRYARAGMSKLAIRTYEFAKDNKSIVDSGSEMSLFEILMDSLCKEGSVREASEYFLWKKELDLSWVPSIRVYNIMLNGWFRSRKLKQGERLWAEMKKENVRPSVVTYGTLVEGYCRMRRVEKALETVGDMSREGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLIKGFCKAADLVGASKILKMMISRGFIPSPTTYNYFFRYFSRCGKVEEGMNLYAKLIESGYTPDRLTYHLLVKMLCEEGKLDMAVQVSKEMRHNGYDMDLATSTMLIHLLCKMHRLEEAFAEFEDMIRKGIVPQYLTFQRMKAELKRQGMTEMAQKLCKLMSSVPYSGNLPNTYGGDREDALTRRKSIIRKAKAFSDMLKDCKDPSELRQYRNSLENAVSSAKSMIVEIEGK | 615 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu1g02550 | 615 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 447 | 481 | IPR002885 | - | |
| Vimu1g02550 | 615 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 377 | 411 | IPR002885 | - | |
| Vimu1g02550 | 615 | Pfam | PPR repeat | 241 | 259 | IPR002885 | - | |
| Vimu1g02550 | 615 | Pfam | PPR repeat | 485 | 514 | IPR002885 | - | |
| Vimu1g02550 | 615 | Pfam | PPR repeat family | 271 | 320 | IPR002885 | - | |
| Vimu1g02550 | 615 | Pfam | PPR repeat family | 341 | 390 | IPR002885 | - | |
| Vimu1g02550 | 615 | Gene3D | Tetratricopeptide repeat domain | 405 | 475 | IPR011990 | GO:0005515 | |
| Vimu1g02550 | 615 | Gene3D | Tetratricopeptide repeat domain | 476 | 547 | IPR011990 | GO:0005515 | |
| Vimu1g02550 | 615 | Gene3D | Tetratricopeptide repeat domain | 107 | 263 | IPR011990 | GO:0005515 | |
| Vimu1g02550 | 615 | Gene3D | Tetratricopeptide repeat domain | 335 | 404 | IPR011990 | GO:0005515 | |
| Vimu1g02550 | 615 | Gene3D | Tetratricopeptide repeat domain | 264 | 334 | IPR011990 | GO:0005515 | |
| Vimu1g02550 | 615 | NCBIfam | pentatricopeptide repeat | 309 | 343 | IPR002885 | - | |
| Vimu1g02550 | 615 | NCBIfam | pentatricopeptide repeat | 275 | 307 | IPR002885 | - | |
| Vimu1g02550 | 615 | NCBIfam | pentatricopeptide repeat | 344 | 377 | IPR002885 | - | |
| Vimu1g02550 | 615 | NCBIfam | pentatricopeptide repeat | 380 | 412 | IPR002885 | - | |
| Vimu1g02550 | 615 | NCBIfam | pentatricopeptide repeat | 487 | 516 | IPR002885 | - | |
| Vimu1g02550 | 615 | NCBIfam | pentatricopeptide repeat | 450 | 482 | IPR002885 | - | |
| Vimu1g02550 | 615 | NCBIfam | pentatricopeptide repeat | 415 | 447 | IPR002885 | - | |
| Vimu1g02550 | 615 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 50 | 455 | - | - | |
| Vimu1g02550 | 615 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 342 | 376 | IPR002885 | - | |
| Vimu1g02550 | 615 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 412 | 446 | IPR002885 | - | |
| Vimu1g02550 | 615 | MobiDBLite | consensus disorder prediction | 59 | 86 | - | - | |
| Vimu1g02550 | 615 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 482 | 516 | IPR002885 | - | |
| Vimu1g02550 | 615 | MobiDBLite | consensus disorder prediction | 60 | 84 | - | - | |
| Vimu1g02550 | 615 | Pfam | PPR repeat | 443 | 475 | IPR002885 | - | |
| Vimu1g02550 | 615 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 272 | 306 | IPR002885 | - | |
| Vimu1g02550 | 615 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 307 | 341 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu1g02550 | 128 | 544 | Miscellaneous Gene Families | AT4G11690 | 25.059 | 2.95e-42 | 158 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu1g02550 | - | - | gmx:100793484 | 991.104 |