Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02545 ATGAGGCCGCAATCGTCGTCTTTGAATCCATATGCAGCCTCATATGTTCCTCTCTCTAAAAGGGGGGCAGACGGTAGAACTACTTTTACAGAAAAAGATTCCAAGAGTTATGATGGGAGTTTTTGGTTTCAGACTCGTCAGGATGCAACAAATGACCAGCAACTCACCATTGCTAGTTCAGAAAGGCTATTTAAACCTGATGCTTTTCCGACAAAAAACCAGCCTGCCTCAAGTTCTTACACTTCATCATCTCAGAATGTGGCAGACGTGGCAGAAAATCAGCTGCTAGCCGAAGAACTGGATATGGATTTGGAATATCTTAGGATTACATTTCCTGGCATATCTTATCAGTCCCTTGTAGATGTCTATAATGTAAACAGTGGAGACTTGGATGCTGCTATTGACATGCTCAGTCAACTTGAGTTAGAGGGAGATGAATCTTCTGGAACTCTTCCAGAGACACTTGATATTGGTGATGTTTCAGAATCTGGATTACCGGCTGATTCTACTTCCTTAAAGCAGAAGAATGTAGCAGAAGAAACCAGCACTTCGTCTAGTCACATGGCATCAGGCGATGTCTTATGA 585 0.4256 MRPQSSSLNPYAASYVPLSKRGADGRTTFTEKDSKSYDGSFWFQTRQDATNDQQLTIASSERLFKPDAFPTKNQPASSSYTSSSQNVADVAENQLLAEELDMDLEYLRITFPGISYQSLVDVYNVNSGDLDAAIDMLSQLELEGDESSGTLPETLDIGDVSESGLPADSTSLKQKNVAEETSTSSSHMASGDVL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02545 194 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 6 1 186 IPR038981 -
Vimu1g02545 194 MobiDBLite consensus disorder prediction 164 194 - -
Vimu1g02545 194 Gene3D - 81 149 - -
Vimu1g02545 194 MobiDBLite consensus disorder prediction 71 85 - -
Vimu1g02545 194 MobiDBLite consensus disorder prediction 144 194 - -
Vimu1g02545 194 ProSiteProfiles CUE domain profile. 99 142 IPR003892 GO:0043130
Vimu1g02545 194 MobiDBLite consensus disorder prediction 66 85 - -
Vimu1g02545 194 CDD CUE_CID7_like 101 143 IPR041806 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02545 Vimu-Chr1 36851838 36853161 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02545 - - gmx:100781938 292.737