Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02543 ATGGAGGAGGAATCCCAAACAGATGCAGGTATGGTTTCTTTGATACAAGATTTGATGATCGATCCTAAATCTCATGTGGGATATGAATTACGCAAGGGACGTTCATTTTATAAAGGCAAATTAGTGCTACCTAGAGGGTCTTCCAGCATACCTACCATTTTTAAGGACATGCATGAGTCCCCAACCGGTGGGAGTTTATGTTTTCGTGGTCAAAGAATATTTTTACACAATGCAAGTGGCTGGTTTGGCAGTGTTCCTTTAGAAGCATCAGGAGACTTTGGCATTCATCCTGAAGAAGGAGAGTTTCATCTTATGTGTCAGGTTCCTGGTGTTGAAGTGAATGCTTTGATGAGAACCTTTAAGATGAAACCTCTTCTCTTCCCGCTGGCAGGATCAGTAACTGCTCTATTTAACTGTCAAGGCCCACTGGATACACCTGTATTTGTTGGCACTGGAATGGTTTCTAGGACGTTCTCGTATTTACAAACTGATACCACTGCATCTGTAGCATCTGAAGCACTTGCTTCAAGTAAGGAAGCTGGAGCGCTGGCAGCATTTGATCGTGTACCATTTTCCTATGTATCTGCTAATTTCACTTTCAACACCGATAACTGTGTTGCTGATTTATACGGAATTAGGGCATGCCTTGTAGATGGTGGTGAAATTCGAGGGGCTGGGAATGCATGGATTTGCCCAGAGGGTGAGGAGGATGAGACAGCGATAGATGTCAATTTTTCTGGAAGTTTGGCCTTTGATAACATCGTGCTTCGTTATATACCAAGTTATTATCATCAGATGCCACTTAAATTAGGAGTGTTAAATGGTGAAACAAAACTTTCAGGATCCCTTTTACGACCAAGGTTTGATATAAAGTGGACTGCACCTACAGCTGAAGGGTCTTTCAGTGATGCTCGAGGAGACATCATAATCTCACATGATTTTATTACTGTGAATTCTGCTTCAGCTGCATTTGATCTGTACACACGAGTTCAAACATCTTATCCTGATGATTTTCATCATAAAAAAGAGTTCAATATTCCAAGAGCCATCCCATTTACCATTGATGGAGTTGAGTTGGATTTACGAATGCGTGGGTTTGAATTCTTCAGCTTGGTTTCTGCATACACTATGGATTCCCCAAGGCCTTTGCATTTGAAAGCGGCTGGAAGAATAAAGTTTCAGGGAAAGGTTTTAAAACCAATTGGCAATATTACAGAACAAAATCTTGAGATGACAAGGCAGAATGTACAAATGTTAGATAAAGGAATTGTAGATAGTCTTGTTGGCGAGGTTTCAATCTCTGGTCTCAAACTGAATCAACTTATGCTTGCCCCTCAGTTGTCTGGGTTGTTGAGAGTTTCTCCCAAGTGTATTAAGTTGGATGCATCTGGTAGACCAGATGAAAGTCTTGCAGTGGAGTTTGTTGGGCCGCTGCAGCCTAGTAGTGAAGATGGTCTGCAAAGTGGTAAATTGTTGTCCATTTCCCTTCAGAAAGGGCAATTGAGGGCTAACATTTGTTTTCAACCATTTCATTCTGCCAACTTGGAGGTACGGCATTTTCCACTTGATGAATTGGAGCTTGCTTCTCTTAGGGGAACCATACAGAGGGCAGAAATCCAGCTTAATCTCCAAAAAAGAAGAGGACATGGAGTCCTGTCTGTACTTCGGCCAAAATTCAGTGGTGTGCTTGGTGAAGCCCTAGATGTGGCAGCTAGGTGGAGTGGAGACGTTATCACTATTGAAAAAACTGTTTTGCAACAAAACTACAGTTATTATGAACTTCAAGGTGAATATGTGTTGCCTGGCACCCGAGATCGTAGTTCTGTTGACAAAGAAGGAGGCCTTATTAAAAGGTTAATGTCTGGTCATATTGGCAATGCTATATCCTCTATGGGCAGGTGGAGAATGAAACTTGAAGTTCCTAGAGCAGAGGTTGCCGAGATGCTTCCCCTTGCAAGGCTTCTTTCTCGAAGTTTGGATCCTGCTGTTCGTTCAAGATCTAAGGATTTCTTCATTCAAAATTTGCAGTCAGTGGGATTATACACTGAAAGCCTTCAACAACTGCTTGAGACAGTGAGGGGACTTCATGCTCCATCAAATGATGTCGTTCTTGAAGATTTAAGTCTGCCTGGTTTATCTGAACTCAAAGGTCACTGGCATGGATCTCTTGATGCTAGCGGTGGGGGAAATGGAGACACCCTGGCAGAATTTGATTTTCATGGAGAGGATTGGGAGTGGGGAGACTACAAAACTAAGCGTGTCTTGGCAGTGGGTGCTTACAGTAATGATGACGGCATGCACCTGGAGAAAATTCTTATCCAGAAGGATAATGCCACCATCCATGCAGATGGAACATTGCTAGGGCCTAAAACCAACCTCCATTTTGCAGTCTTGAATTTTCCGGTTAGTCTTGTTCCAACTGTAGTTCAGATCATTGAATCTACAGCAATGGATGTTGTTCATTCTCTACGACAGTTATTGGCACCCATTAAGGGTATATTGCACATGGAAGGAGATCTTAGAGGAAGTTTAGCAAAACCAGAATGTGATGTGCAAGTAAGACTACTAGATGGTTCTGTTGGTGGTGTTGATCTTGGAAGAGCTGAAGTTGTTGCCTCTCTAACCTCAACCAGTCGTTTTCTTTTCAATGCAAAATTTGAACCTATAACCCAAAATGGGCATGTACTTGTTCAGGGTAGCATTCCTGTTGCCTTTGTACAAAATAACACATTACAGGAAGATGTAGAATTAGATAAGAGTCAGATTACTTGGGTTCCTGATTGGGTGAAGGAGAAAAATAGAGGGAACGCTGATGATGCTGGTGACAAAAAGGTTAGTAGAGATAGAAATGAAGAAAGTTGGAATACTCAATTAGCAGAAAGCCTTAAAGGACTAAATTGGCAAATTTTGGATGTTGGAGAAGTCAGGATTGATGCTGATATAAAAGACGGGGGAATGACATTGGTTACAGCTTTATCTCCACATGCCAATTGGCTTCATGGAAATGCGGATTTGAAGCTTGAGGTCAGAGGTACAGTTGATCAGCCAGTACTTAATGGACACGCATCATTCCACAGGGCATCTATTTCTTCACCAGTGCTACGAAAACCACTTACCAACTTTGGTGGAAATGTTCACGTGCAATCAAACAGGTTATGCATCACCTCACTGGAGAGTAGGGTAAGCAGAAAAGGAAAGCTTCTTGTAAAAGGGAATCTGCCACTCAGAGCAAGTGAAGCAGCCCCAGATGACAAGATTGAATTGAAGTGCGAAGTTGATTCTCAGTTGCAAATAACTGGTTCAATATTGCAACCGAACATATCTGGGAACATAAAAATAAGTCAGGGAGAAGCATATTTGCCACATGATAAAGGTGGTACTCCTGCTTCTAATAGATTTCCATCCAATCATTCTGGGCTTCCTACTGCTGGTGTCAGTCGTGTGTTTGCTTCAAGATATGTATCACGATTTCTCAACTCAGAATCTGCTTCAAGGACGACAGTGTCTCAATCCTCTGGCTCTGTGACGGCTAACAAGTCAACTCAGGTTGAAAAGCAGATGGAGCAAGTGCAGATTAAACCAAATGTAGAAATCTGTCTCAATGATTTGAAGCTTGTTCTTGGACCAGAGTTGAAGATAGTTTATCCTTTGATTCTTAATTTTAGTGTAAGTGGAGAGCTTGAGTTAAATGGTCGAGCCCATCCCAAATGGATAAAACCTAGAGGCATACTAACATTTGAGAATGGTGAAGTCGATCTAGTTGCAACACAGGTGAGACTAAATCGAGAGCACTTAAACATTGCAAAATTTGAGCCTGAGTATGGACTAGATCCAATGCTTGATTTAGCTTTGGTGGGATCTGAGTGGCAATTCAGAATTCAAGGTAGAGCTAGCAATTGGCAGGACAAACTTGTGGCTGCTCGAAAGTTTGAGAGTCAGTTGGCTGAATCCATTTTAGAAGGCAATGGTCAGCTTGCTTTTGAAAAGCTTGCAACAGCAACTCTGGAAAAATTAATGCCACGAATAGAAGGAAAGGGCGAATTTGGCCAGGCTAGGTGGAGGCTAGTCTATGCACCTCAGATACCCAGTTTAGTTTCTGTTGATCCTACAGCAGATCCTCTCAAGTCACTTGCCAGTAATATATCGTTTGGTACAGAAGTTGAAGTTCAGCTTGGTAAACGTCTTCAGGCCACCATTGTTAGGCAAATGAAGGAGTCTGAGATGGCAATGCAATGGACACTGAGCTATCTTCTTACAAGTCGTTTGCGAGTGCTCCTCCAATCTGCTCCATCTAAACGCCTTCTCTTTGAATACTCTGCTACATCCCAAGATTGA 4335 0.4219 MEEESQTDAGMVSLIQDLMIDPKSHVGYELRKGRSFYKGKLVLPRGSSSIPTIFKDMHESPTGGSLCFRGQRIFLHNASGWFGSVPLEASGDFGIHPEEGEFHLMCQVPGVEVNALMRTFKMKPLLFPLAGSVTALFNCQGPLDTPVFVGTGMVSRTFSYLQTDTTASVASEALASSKEAGALAAFDRVPFSYVSANFTFNTDNCVADLYGIRACLVDGGEIRGAGNAWICPEGEEDETAIDVNFSGSLAFDNIVLRYIPSYYHQMPLKLGVLNGETKLSGSLLRPRFDIKWTAPTAEGSFSDARGDIIISHDFITVNSASAAFDLYTRVQTSYPDDFHHKKEFNIPRAIPFTIDGVELDLRMRGFEFFSLVSAYTMDSPRPLHLKAAGRIKFQGKVLKPIGNITEQNLEMTRQNVQMLDKGIVDSLVGEVSISGLKLNQLMLAPQLSGLLRVSPKCIKLDASGRPDESLAVEFVGPLQPSSEDGLQSGKLLSISLQKGQLRANICFQPFHSANLEVRHFPLDELELASLRGTIQRAEIQLNLQKRRGHGVLSVLRPKFSGVLGEALDVAARWSGDVITIEKTVLQQNYSYYELQGEYVLPGTRDRSSVDKEGGLIKRLMSGHIGNAISSMGRWRMKLEVPRAEVAEMLPLARLLSRSLDPAVRSRSKDFFIQNLQSVGLYTESLQQLLETVRGLHAPSNDVVLEDLSLPGLSELKGHWHGSLDASGGGNGDTLAEFDFHGEDWEWGDYKTKRVLAVGAYSNDDGMHLEKILIQKDNATIHADGTLLGPKTNLHFAVLNFPVSLVPTVVQIIESTAMDVVHSLRQLLAPIKGILHMEGDLRGSLAKPECDVQVRLLDGSVGGVDLGRAEVVASLTSTSRFLFNAKFEPITQNGHVLVQGSIPVAFVQNNTLQEDVELDKSQITWVPDWVKEKNRGNADDAGDKKVSRDRNEESWNTQLAESLKGLNWQILDVGEVRIDADIKDGGMTLVTALSPHANWLHGNADLKLEVRGTVDQPVLNGHASFHRASISSPVLRKPLTNFGGNVHVQSNRLCITSLESRVSRKGKLLVKGNLPLRASEAAPDDKIELKCEVDSQLQITGSILQPNISGNIKISQGEAYLPHDKGGTPASNRFPSNHSGLPTAGVSRVFASRYVSRFLNSESASRTTVSQSSGSVTANKSTQVEKQMEQVQIKPNVEICLNDLKLVLGPELKIVYPLILNFSVSGELELNGRAHPKWIKPRGILTFENGEVDLVATQVRLNREHLNIAKFEPEYGLDPMLDLALVGSEWQFRIQGRASNWQDKLVAARKFESQLAESILEGNGQLAFEKLATATLEKLMPRIEGKGEFGQARWRLVYAPQIPSLVSVDPTADPLKSLASNISFGTEVEVQLGKRLQATIVRQMKESEMAMQWTLSYLLTSRLRVLLQSAPSKRLLFEYSATSQD 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02543 1444 PANTHER EMBRYO DEFECTIVE 2410 62 1444 - -
Vimu1g02543 1444 MobiDBLite consensus disorder prediction 933 952 - -
Vimu1g02543 1444 Coils Coil 527 547 - -
Vimu1g02543 1444 Pfam TamB, inner membrane protein subunit of TAM complex 1072 1287 IPR007452 GO:0005886|GO:0009306
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02543 Vimu-Chr1 36822067 36843782 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02543 - - gmx:100788741 2572.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02543 1 36822067 36843782 Vimu10g02882 10 39984143 40011829 PCT