Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02532 ATGGAAGGGATGAAGCTTGAAAGGTGGCTCACAAGTGTTTTGTTCCTCATTGTTGCCACAGTGAGCAATGCATTAGGTGCTTTTGTGGGGGTAAACATTGGCACTGATGTTACTGATCTTCCATCTGCTTCAAATCTGGTTGCTATTCTGAAAGCACATCAAATTACACATGTGCGTCTGTATGATGCCAACGAACACATGCTACAAGCACTTTCAAAAACTGGCATTGAAGTAATTGTTGGTGTCACAGATGAAGAGATACTAGGCATTGGAGAATCTGCATCAGTTGCTGCAGCTTGGATTAGTAAGAATGTGGCTGCATACATGCCATTTACTAACATCACAGCAATATCAGTAGGTAGTGAGGTTCTCACCTTAGTCCCAAAAGTTGCACCTGTTCTTGTTCCTGCCATGAACCATCTGCACAAAGCACTTGTTGCTTCAAACCTTAACTTTAGGGTTAAGATTTCAACGCCACAGTCCATGGATATAATTTCCAGGCCTTTTCCTCCTTCCACAGCCACCTTTAACTCCTCATGGAACTCCACAATCTACCAGCTCCTTCAGTTTTTGCTGAACACAAATTCCTCTTATATGTTAAATGCCTACCCTTATTATGGATACACTAGAGGAGATGGCATTTTCCCTATTGAATATGCTCTATTCAGACCCCTTTCTCCAGTGAAGCAAATTGTTGACCCAAACACACTGTTCCATTACAATAGCATGTTTGAGGCCATGGTGGACGCTACGTATTATGCCATAGAAGCCTTCAATTTCAATAATATACCTATTGTTGTCACAGAAACGGGTTGGCCTAGTTTTGGTGCAGTAAATGAACCAGATGCTACTGAAAAGAATGCTGAGACCTACAATAATAATTTAATTCTGAGAGTACTCAATGGTTCAGGACCCCCTAGTCAGCCAAAGATAGCCCTTAATACCTACCTATATGAGTTATTTAATGAGGACAAGAGAAAAGGGCCTATATCAGAAAAGAATTGGGGTATTTTTTATGCTAATGGAAGTAGTGTTTATCCCTTCAGTTTTAGTGCTTCCAACCAGAGTAATGGAAATTCTCTAGGATCATTTTGTGTGGCTAAAGATGATTCAGACACTGACAAATTGCAAGCTGGCTTGAGTTGGGCTTGTGGACAAGGCCAAGCTAACTGTGTAGCTATCCAACCAGGAAGACCATGCTACTTCCCCAATAACGTGAAAAGCCATGCCTCTTATGCTTATAATGATTATTATCAAAAAATGCATAATGCTGGTGGCACATGTGACTTTGATGGTACAGCTACAACAACAACTGAGGATCCCAGTTATGGGTCCTGTATATATGCGGGAAGTGCTAACTCGAGCTTTGGTGGAAGAAGTTCATCTTCTGCAGCAATTGGACTTGGACCTGTAAGTCCTGTTGGAGTTGGAGCTGGTTTGAACCTGCAAGTGTCCAGCTTTCAGTATTTGATATCGTCTATTGGTGTTCTTTTTGCTTTAATGATGTCATGA 1512 0.4134 MEGMKLERWLTSVLFLIVATVSNALGAFVGVNIGTDVTDLPSASNLVAILKAHQITHVRLYDANEHMLQALSKTGIEVIVGVTDEEILGIGESASVAAAWISKNVAAYMPFTNITAISVGSEVLTLVPKVAPVLVPAMNHLHKALVASNLNFRVKISTPQSMDIISRPFPPSTATFNSSWNSTIYQLLQFLLNTNSSYMLNAYPYYGYTRGDGIFPIEYALFRPLSPVKQIVDPNTLFHYNSMFEAMVDATYYAIEAFNFNNIPIVVTETGWPSFGAVNEPDATEKNAETYNNNLILRVLNGSGPPSQPKIALNTYLYELFNEDKRKGPISEKNWGIFYANGSSVYPFSFSASNQSNGNSLGSFCVAKDDSDTDKLQAGLSWACGQGQANCVAIQPGRPCYFPNNVKSHASYAYNDYYQKMHNAGGTCDFDGTATTTTEDPSYGSCIYAGSANSSFGGRSSSSAAIGLGPVSPVGVGAGLNLQVSSFQYLISSIGVLFALMMS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02532 503 FunFam Glucan endo-1,3-beta-glucosidase 4 358 452 - -
Vimu1g02532 503 Pfam X8 domain 364 435 IPR012946 -
Vimu1g02532 503 SUPERFAMILY (Trans)glycosidases 29 349 IPR017853 -
Vimu1g02532 503 SMART X8_cls 363 448 IPR012946 -
Vimu1g02532 503 Gene3D - 359 455 - -
Vimu1g02532 503 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 19 437 IPR044965 GO:0004553|GO:0005975
Vimu1g02532 503 Gene3D Glycosidases 28 358 - -
Vimu1g02532 503 FunFam Glucan endo-1,3-beta-glucosidase 3 28 353 - -
Vimu1g02532 503 ProSitePatterns Glycosyl hydrolases family 17 signature. 263 276 IPR000490 GO:0004553|GO:0005975
Vimu1g02532 503 Pfam Glycosyl hydrolases family 17 29 349 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02532 Vimu-Chr1 36650823 36653229 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02532 4 475 Glycoside Hydrolase AT3G13560 65.474 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02532 K19892 - gmx:100779131 881.322