Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02525 CTATACGATTTCATCTGTAGCCCTTTGCAACCTCTGCTCTCCAAGATGGCTCCTCCCAGAGGTCGTGGTGGTGGTGGAGGTTTCAGGGGTGGTAGGGGTGACAGAGGTAGAGGAAGGGGCGGTGGTGGAAGAGGAGGAGACAGGGGTACACCATTTAAAGCAAGAGGTGGTGGGAGAGGAGGAGGAAGGGGAGGTGGACGTGGAGGAGGTAGAGGTGGTGGCCGTGGTGGAATGAAGGGAGGGAGTAAGGTCATGGTTCAACCACATAGACATGGGGGTATTTTTATTGCCAAGGGTAAGGAAGACGCCCTTGTCACTAAGAATCTTGTTCCTGGTGAAGCTGTTTACAATGAGAAAAGAGTCACTGTTCAGAACGAAGATGGTTCCAAAGACGAGTACAGAATTTGGAATCCTTTCCGCTCGAAGTTGGCTGCTGCCATCCTTGGTGGAGTTGATAACATATGGATTAAACCTGGTGCCAGAGTCCTTTACTTAGGTGCTGCTTCTGGCACAACTGTTTCTCACGTTTCTGACATTGTTGGCCCAACAGGAGTTGTCTATGCAGTTGAATTTTCTCATAGGAGTGGACGTGATTTGGTCAATATGGCAAAGAAGCGTACTAATGTTATACCCATTATTGAAGATGCCAGACATCCCGCCAAGTACAGGATGTTAGTTGGTATGGTTGATGTCATATTTTCTGATGTTGCTCAGCCTGATCAGGCAAGGATTTTGGGGCTCAATGCTTCATATTATCTCAAAGCGGGAGGTCATTTTGTTATTTCAATCAAGGCTAACTGCATAGACTCAACAGTTCCTGCGGAGGCAGTGTTTGAAAGCGAAGTGAACAAGTTGAAGGCTGATCAATTCAAGCCATTCGAGCAAGTCACTCTTGAACCATTTGAGAGGGACCATGCTTGTGTTGTCGGTGGATACAGAATGCCTAAGAAGAAAAAAGATACTGCTGCGTAG 972 0.4733 LYDFICSPLQPLLSKMAPPRGRGGGGGFRGGRGDRGRGRGGGGRGGDRGTPFKARGGGRGGGRGGGRGGGRGGGRGGMKGGSKVMVQPHRHGGIFIAKGKEDALVTKNLVPGEAVYNEKRVTVQNEDGSKDEYRIWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTVPAEAVFESEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDTAA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02525 323 Gene3D Phosphorylase Kinase; domain 1 81 136 - -
Vimu1g02525 323 FunFam Fibrillarin like 1 81 136 - -
Vimu1g02525 323 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 85 310 IPR029063 -
Vimu1g02525 323 PRINTS Fibrillarin signature 209 238 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu1g02525 323 PRINTS Fibrillarin signature 291 312 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu1g02525 323 PRINTS Fibrillarin signature 132 151 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu1g02525 323 PRINTS Fibrillarin signature 184 201 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu1g02525 323 PRINTS Fibrillarin signature 104 123 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu1g02525 323 PRINTS Fibrillarin signature 159 180 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu1g02525 323 PRINTS Fibrillarin signature 239 268 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu1g02525 323 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 21 318 - -
Vimu1g02525 323 Gene3D Vaccinia Virus protein VP39 137 314 IPR029063 -
Vimu1g02525 323 SMART Fibrillarin_2 86 314 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu1g02525 323 ProSitePatterns Fibrillarin signature. 184 198 IPR020813 GO:0003723|GO:0006364|GO:0008168
Vimu1g02525 323 FunFam Fibrillarin like 1 137 314 - -
Vimu1g02525 323 MobiDBLite consensus disorder prediction 12 83 - -
Vimu1g02525 323 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 100 313 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu1g02525 323 Pfam Fibrillarin 86 313 IPR000692 GO:0003723|GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02525 Vimu-Chr1 36602715 36605666 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02525 K14563 - gmx:100797625 500.745