Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02518 ATGGCGATGCTTTGGAAGGTATCATCCTCACTCTTCCTTTCACTCTCCCTCAAACCTAAACTCATATACCGCACCAATGCCTTTCTGCTTTCTCGTTCAACCGCCACCACCTCAAAGCACAAGACGCAGAACGCAAAACCAGGCTTGGCCAAAGAAAAGCGCAGAACGCGCTCCGACAAACACTTCAACCCAGACGCTATAATTCACCATTGCAACGTTAACCACTCCGACACCGACACCAAGTTCTCGCACATTCCGGTCATGCTGGGTGAAGTCATGGACGTCTTCTCCGCCGCTTCCTTAACCTCCTTTGTCGATTGCACCCTTGGCGCTGCCGGTCACTCCACCGCCGTGATCAAGGGTCATCCTGAGATGAAGTTTTTTGTGGGGATGGATGTGGATTCTGTTGCACACGACATTGCCCAGCCACGCCTTGATGCCGTTTTAAGTGGTGATGTCAAAGCTTTTACCGCTTTGAGGAATTTTAGAGATGTGAAGTCAGTGCTTAGAGAATTCTCAGACTTACACATGGGTGTTGATGGCATCTTAATGGACTTGGGAATGTCATCTATGCAGGTAGACAATCCTGCGAGAGGATTCAGTGTGCTCAGTGATGGACCCCTTGATATGCGGATGGATCCTCAGGCAAGTCTTAAAGCAGAGGACATATTAAATTCCTGGCCAGATTCTGAAGTGGGCCGTATCCTAAGAGAATATGGAGAAGAAAGTAATTGGCGAACCCTGCAAAAGAAAATTGTCAATGCCCGGTTACATGGTGGATTTCACTCTACCTCTGATTTGCTAGATCTTATCAAGCGTGTGACTCCTCCAATGAAAGGTAGTTCCTTCTCCGGGCTTCTTTTTTTGCAGTTGTGTGGAAGACAAGGTTGGATAAAGACAGCAACCCGGGTTTTTCAAGCTCTGAGAATTGCTGTTAATGATGAACTGAAGACACTTGAGGATTCCCTCTATTCTTGTTTTGATTGCCTTGCACCCAAGGGTAGACTTGCTGTCATATCTTTTCACAGTCTTGAAGACAGAATTGTGAAACAGACATTTCTTAATATAGTCAAAGGGAGCGAAGAAGAGGAAGAAAGGGAGAACCTGAACAGTGATTTGAGGAAGACTAGTGATGAAATCAAAGAAAAAGAAGCATGGATAAAGCAAGTAATACATGGATCAAATGGAACAATTCTCACAAAAAGACCAATCACACCATCAGGAGAAGAAGAAAAATTGAACCGTAGAAGTAGAAGTGCAAAGCTCAGGGTTATTCAGAAGCACTGA 1287 0.4522 MAMLWKVSSSLFLSLSLKPKLIYRTNAFLLSRSTATTSKHKTQNAKPGLAKEKRRTRSDKHFNPDAIIHHCNVNHSDTDTKFSHIPVMLGEVMDVFSAASLTSFVDCTLGAAGHSTAVIKGHPEMKFFVGMDVDSVAHDIAQPRLDAVLSGDVKAFTALRNFRDVKSVLREFSDLHMGVDGILMDLGMSSMQVDNPARGFSVLSDGPLDMRMDPQASLKAEDILNSWPDSEVGRILREYGEESNWRTLQKKIVNARLHGGFHSTSDLLDLIKRVTPPMKGSSFSGLLFLQLCGRQGWIKTATRVFQALRIAVNDELKTLEDSLYSCFDCLAPKGRLAVISFHSLEDRIVKQTFLNIVKGSEEEEERENLNSDLRKTSDEIKEKEAWIKQVIHGSNGTILTKRPITPSGEEEKLNRRSRSAKLRVIQKH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02518 428 Gene3D Putative methyltransferase TM0872, insert domain 196 315 IPR023397 GO:0008168
Vimu1g02518 428 PANTHER S-ADENOSYL-METHYLTRANSFERASE MRAW 80 427 IPR002903 GO:0008168
Vimu1g02518 428 NCBIfam 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH 81 427 IPR002903 GO:0008168
Vimu1g02518 428 Hamap Ribosomal RNA small subunit methyltransferase H [rsmH]. 84 428 IPR002903 GO:0008168
Vimu1g02518 428 Pfam MraW methylase family 82 427 IPR002903 GO:0008168
Vimu1g02518 428 SUPERFAMILY Putative methyltransferase TM0872, insert domain 198 313 IPR023397 GO:0008168
Vimu1g02518 428 Coils Coil 359 379 - -
Vimu1g02518 428 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 84 427 IPR029063 -
Vimu1g02518 428 Gene3D Vaccinia Virus protein VP39 84 425 IPR029063 -
Vimu1g02518 428 MobiDBLite consensus disorder prediction 36 57 - -
Vimu1g02518 428 MobiDBLite consensus disorder prediction 398 428 - -
Vimu1g02518 428 FunFam Ribosomal RNA small subunit methyltransferase H 196 315 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02518 K03438 - gmx:100787277 682.945