Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02485 ATGCTTCAAACTCACATTAACATTTTCTCACCCTTCACCGCCGCACTCCACTCAAAGCAATTCCGTTCCTTGCGTGTCTGTTCCTCCTCCGCTCCGGTACGCCGTCGTGTTGCAACCACCACAACTCCTGGCGAGGCCAATCTCCGGCGCCTCACTTCGCGCATTGTTCAACTCACCCGCCGGAAACAGCTTCGGCAGATTTTGGATGAGATTGAGGTTGCGAAGAGGCAGTTCGGGAAGCTGAACACGATTGTGATGAACGCGGTGCTGGAGGCTTGTGTCCGTTGCGGTGATATCGATTCAGCGATTAGGGTATTCGTAGAGATGAAAAAGAGCGACGGTTGTGGTGTGGATACTGTCACCTATGCAACACTTTTGAAGGGGTTAGGTGAGGCACGGAGGGTCGACGAGGCTTTTGAAATGCTTGAAACTGTAGAAAATGGCACTGCCATGGGAAGTCCAAACTTGTCAGCTCCATTGATATTTGGTCTGCTAAATGCCTTAATCAAAGCAGGAGACTTGCGTCGTGCACATGGTCTCCTTGCCCGATATGGTTTTGTGTTTCAAGAAGGTGGCAAATTTTCAGTATCAGTATACAACATACTAATTAAGGGCTACGTAAACTCAGGTTATCCGCACACTGCAATAAACATGCTGAATGAAATTTTACGTCAAGGTATAAGGCCAGACAGGCTCACATATAACACACTAATTCTAGCATGCGTTGAGAGTGGAAAGTTGGACACTGCAATGCAATTTTTTGAGGAAATGAAGGGAAGAGCACAGAAATTTGTCAATGATGATATGTTTCCAGATATTGTTACATATACGACATTGCTTAAGTTTTTGATGGGTAGTGTCCGTAGTTGTGTTCAGTTGCCTCTAGAGCGCTCTCCAGCATCTCTCTTTAATTTTCTCTCTCTTTCACTCTCGTTATTGCAGGGTTTTGGGATGGCAAAGGATCTTACTTCAGTTCTAAAAATAGTTCTTGAAATCAAATCTCGTTCAGAATTATACATTGATAGAACTGCTTACACTGCTATAGTTGATGCTTTTCTAACATGTGGCTCAGTTAAAGGTGCTCTTTGTGTTTTTGGAGAAATATTGAAGCAGGCTGGTTTGAATCCAGAGTTGAGGCCAAAGCCTCACCTCTATCTATCCATGATGCGTGCCTTCGCTTTTCTAGGAGATTATGATCTAGTTAAAATTTTGCATAGACGGATTTGGCCAGATTCATCAGGAACCATATTATTAGTAGCTCAAGAAGAAGCTGATCACCTTCTAATGGAAGCAGCACTGAATGCTGGCCAGATCAATGTTGCCATTAAAACACTTGCTGAGATAATTTCAAGATGGAAGGGCATATCCTGGACAAGTCGTGGGGGCATGGTAGCTTATCGCATTGAGGCCGTGTTGGGATTCTCAAAGTCTTTGTTCAGTCCCTACTTACTTCCTCAGGTTTTACCTTCTGAACCGATTGAGAACTATATGATACGATTTGATGCGACACGGCCACTACAAGGTACCATAAAGCTGAGGAAGGTGGTTATGCGTTTCTTTGATGAAGCAGTTGTTCCTGTTGTGGATGAGTGGGGTAGCTGTATAGGGCTATTACACCGTGAAGATTGCAAGCAGTTGGATGCCCCACTTTCAACTATGATGAGAAGCCCTCCTCCCAGTGTTACGAGTTCAACATCTGTTGGTCATGTAGTTGATTTAATTTTAGCGAAGCGATATCCTATGGTTGTCATTGTAAATTACACGAACTCATTTGCTACTCCTCCATATAACTCTAGAGCAGTTGGAGTTTTTACACCAGAGCAATTAAGTAGGTTTATCTCACCAGTATCTCGAGTAAAATGGACAGACCTTTGTGAAAGGTAA 1884 0.4374 MLQTHINIFSPFTAALHSKQFRSLRVCSSSAPVRRRVATTTTPGEANLRRLTSRIVQLTRRKQLRQILDEIEVAKRQFGKLNTIVMNAVLEACVRCGDIDSAIRVFVEMKKSDGCGVDTVTYATLLKGLGEARRVDEAFEMLETVENGTAMGSPNLSAPLIFGLLNALIKAGDLRRAHGLLARYGFVFQEGGKFSVSVYNILIKGYVNSGYPHTAINMLNEILRQGIRPDRLTYNTLILACVESGKLDTAMQFFEEMKGRAQKFVNDDMFPDIVTYTTLLKFLMGSVRSCVQLPLERSPASLFNFLSLSLSLLQGFGMAKDLTSVLKIVLEIKSRSELYIDRTAYTAIVDAFLTCGSVKGALCVFGEILKQAGLNPELRPKPHLYLSMMRAFAFLGDYDLVKILHRRIWPDSSGTILLVAQEEADHLLMEAALNAGQINVAIKTLAEIISRWKGISWTSRGGMVAYRIEAVLGFSKSLFSPYLLPQVLPSEPIENYMIRFDATRPLQGTIKLRKVVMRFFDEAVVPVVDEWGSCIGLLHREDCKQLDAPLSTMMRSPPPSVTSSTSVGHVVDLILAKRYPMVVIVNYTNSFATPPYNSRAVGVFTPEQLSRFISPVSRVKWTDLCER 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02485 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 376 IPR002885 -
Vimu1g02485 627 PANTHER OS09G0431600 PROTEIN 312 622 IPR044781 -
Vimu1g02485 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Vimu1g02485 627 NCBIfam pentatricopeptide repeat 198 230 IPR002885 -
Vimu1g02485 627 NCBIfam pentatricopeptide repeat 120 143 IPR002885 -
Vimu1g02485 627 NCBIfam pentatricopeptide repeat 86 118 IPR002885 -
Vimu1g02485 627 NCBIfam pentatricopeptide repeat 233 258 IPR002885 -
Vimu1g02485 627 Gene3D - 489 611 IPR046342 -
Vimu1g02485 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Vimu1g02485 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 148 IPR002885 -
Vimu1g02485 627 SUPERFAMILY CBS-domain pair 492 611 IPR046342 -
Vimu1g02485 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 112 IPR002885 -
Vimu1g02485 627 Gene3D Tetratricopeptide repeat domain 40 149 IPR011990 GO:0005515
Vimu1g02485 627 Pfam PPR repeat family 196 241 IPR002885 -
Vimu1g02485 627 Pfam PPR repeat family 82 129 IPR002885 -
Vimu1g02485 627 Gene3D Tetratricopeptide repeat domain 301 470 IPR011990 GO:0005515
Vimu1g02485 627 Gene3D Tetratricopeptide repeat domain 151 292 IPR011990 GO:0005515
Vimu1g02485 627 ProSiteProfiles CBS domain profile. 553 624 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02485 Vimu-Chr1 36077802 36091075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02485 96 451 Glycosyltransferase AT1G05670 22.222 8.18e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02485 - - gmx:100813146 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02485 1 36077802 36091075 Vimu1g02485 1 36077802 36091075 ECH