Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02475 ATGTCATCAAAGACAACCATGTATGAGCCAAAAAACATCCTCATAACTGGAGCTGCTGGTTTCATAGCCTCGCATGTCACCACCAAGCTAATCAACAAGTACCCTAGCTACAAGATTGTAGCTCTTGATAAAGTAGACTACTGCTCCACTGTCAGGAATTTGAGGTCATGTATTTCATCACCAAACTTCAAATTTGTTAGGGGTGATATAGCTACTGCAGATATTGTGAATCATATTTTGATAGAAGAGAAAATAGACACCATTATGCATTTTGCTGCTCAAACTCATGTGGACAATTCATTTGGGAACTCCATGGAATTCACCTACAATAATATCTATGGCACTCATGTGCTTCTTGAAGCTTGCAGGGTCACCAATTATGTCAGAAGGTTCATTCATGTCAGCACAGATGAGGTCTATGGTGAAACAGACTTAGAGGATAATATTGGAAACCATGAGACATCTCAGCTTCTACCCACCAATCCTTACTCTGCAACAAAAGCAGGAGCAGAAATGTTGGTCATGGCCTACCACAGGTCTTATGGTCTTCCAGTTATAACTTCCAGAGGCAATAATGTGTATGGTCCCAACCAATACCCAGAAAAGCTTGTTCCTAAGTTCATCCTTCTTGCCATGAGGGGTGAGAAATTGCCAATCCATGGAGATGGATCAAATGTGAGGAGCTACCTCCACTGTGAAGATGTAGCAGAAGCTTTTGATGTCATACTCCACAGAGGAGAGATTGGCCAAATTTACAACATTGGCACCAAGAAAGAAAGGAGTGTGTTAGATGTTGCAGAGGATATATGCAAACTCTTTAAATTGAATCCTAAAGATGTTATTGAGTTTGTTCAAGATAGGCCTTTCAATGATAAGAGATATTTTCTTGATGATCAAAAGCTCAAACAACTTGGTTGGGAGGAGAGAATTTCCTGGGAGGAAGGACTCAAGAGAACAATTGACTGGTACCAAAAGAATCCTGATTGGTGGGGTGATGTTTCCACTGCTTTAAACCCTCATCCCCGTTTCTCAGCCATCAATCTCTCTGATGAGGCTCAATGGTCCTTTCAATATGGATTCTGTAGGCTTGCAAGGTCATTTACCGACATTCGAGGAAGAAACACTTCAGGATTCAAGTTTTTGATATATGGGAGGACTGGTTGGATTGGGGGTTTGTTGGGAAAGCTTTGTGATGAAGACGGAATTGATTGGGAATATGGGAGAGGGAGATTGCAAGATAGAAAATCACTTAAGGAGGACATAAGAAGAGTAAAGCCAACCCATGTGTTGAATGCAGCTGGTGTTACAGGAAGGCCTAATGTTGATTGGTGTGAATCACACAAGGTTGAAACTATAAGGACTAATGTTGTAGGCACTTTAACACTGGCTGATGTTTGCAAGGAACAAAACTTATATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGACAAGGACCACCCTCTAGGATCAGGCATTGGGTTCAAGGAAGAAGACAAACCAAATTTCATAGGCTCCTTCTATTCCAAGACCAAGGCCATGGTGGAGGACCTTCTAAGAAACTATGCAAATGTCTGCACATTGAGAGTTAGAATGCCAATATCCTCAGATCTTAGCAATCCAAGAAACTTCATCACAAAGATTTCTCGTTACAATAAAGTGGTAAACATACCTAACAGCATGACAGTACTAGATGAACTCTTACCCATATCAATTGAAATGGCCAAGAGGAACTTAAGAGGGATTTGGAACTTCACCAACCCAGGGGTGATTAGCCACAATCAGATATTAGAATTGTATAGGGATTACATAGATCCACAGTTTAAATGGGAGAATTTTGATTTGGAAGAACAAGCAAAGGTAATAGTTGCTCCAAGGAGTAACAATGAAATGGATGCTTCCAAGCTCAAAAAAGAGTTCCCAGAATTGTTGTCCATCAGAGATTCCATTATCAAGTTTGTCTTTGAGCCTAACAAGAAAACTTGA 1989 0.4037 MSSKTTMYEPKNILITGAAGFIASHVTTKLINKYPSYKIVALDKVDYCSTVRNLRSCISSPNFKFVRGDIATADIVNHILIEEKIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTNYVRRFIHVSTDEVYGETDLEDNIGNHETSQLLPTNPYSATKAGAEMLVMAYHRSYGLPVITSRGNNVYGPNQYPEKLVPKFILLAMRGEKLPIHGDGSNVRSYLHCEDVAEAFDVILHRGEIGQIYNIGTKKERSVLDVAEDICKLFKLNPKDVIEFVQDRPFNDKRYFLDDQKLKQLGWEERISWEEGLKRTIDWYQKNPDWWGDVSTALNPHPRFSAINLSDEAQWSFQYGFCRLARSFTDIRGRNTSGFKFLIYGRTGWIGGLLGKLCDEDGIDWEYGRGRLQDRKSLKEDIRRVKPTHVLNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKEQNLYMMNFATGCIFEYDKDHPLGSGIGFKEEDKPNFIGSFYSKTKAMVEDLLRNYANVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVISHNQILELYRDYIDPQFKWENFDLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIRDSIIKFVFEPNKKT 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02475 662 CDD dTDP_HR_like_SDR_e 379 651 - -
Vimu1g02475 662 Gene3D - 13 317 - -
Vimu1g02475 662 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 375 654 IPR036291 -
Vimu1g02475 662 Gene3D - 204 326 - -
Vimu1g02475 662 Pfam GDP-mannose 4,6 dehydratase 14 319 IPR016040 -
Vimu1g02475 662 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 334 IPR036291 -
Vimu1g02475 662 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 7 342 - -
Vimu1g02475 662 Pfam RmlD substrate binding domain 379 549 IPR029903 -
Vimu1g02475 662 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 370 662 - -
Vimu1g02475 662 Gene3D - 368 662 - -
Vimu1g02475 662 CDD dTDP_GD_SDR_e 11 328 IPR005888 GO:0008460|GO:0009225
Vimu1g02475 662 FunFam UDP-glucose 4,6-dehydratase 13 214 - -
Vimu1g02475 662 NCBIfam dTDP-glucose 4,6-dehydratase 12 332 IPR005888 GO:0008460|GO:0009225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02475 Vimu-Chr1 35857853 35860102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02475 12 323 Miscellaneous Gene Families AT1G02000 24.551 1.34e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02475 K12450 - gmx:100776241 1255.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02475 1 35857853 35860102 Vimu1g02475 1 35857853 35860102 ECH