Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02469 ATGCTTTTGTCCTCAATACGCAGAAAATTCGCAAGGGGAGTGTGGCCCATTCGAACGCTATCTTCAAACGCTGAAATGGAAGAGTTTTTGGATTACTTAGATTCGCTAAAAAATTTCGAGAAATCAGGAGTGCCCAGAGGTGCCGGCACCGATTCAGACGAGGGTTTCGATCTGGGTAGAATGAGACGCCTCATGGAGCGTTTCGGTAATCCTCACACCAAGTTCAAGGCGGTTCATATTGCTGGGACTAAGGGAAAGGGATCAACAGCTGCGTTTATATCTAATATTCTGAGGACGGAAGGTTATTCTGTTGGTTGTTACACTAGTCCACATATCCTGACCATCAGGGAGCGTATTTTACTTGGAAGATCTGGCCACCCAGTGTCGGCAAAGTTGTTGAATGATCTCTTTCACAGGATCAAGCAGGAACTTGAGCAGGCAATGAAAGAGGAAAATGGTTGCATAAGCCACTTCGAGGTTTTCACCGCAATGGCATATATCTTATTTGCTGATGAGAATGTTGACATTGCCGTTATTGAGGCTGGGTTAGGGGGTGCACGAGATGCAACAAATATCATATCCAGCTCTGGACTTGCTGCAGCAGTCATAACTACTGTAGGTGAGGAACATTTGGCAGCTCTTGGGGGTTCTTTGGAAACAATTGCAATGGCAAAAGCAGGAATCATAAAACAAGGCTGCCCATTGGTGTTGGGTGGGCCATTTGTTCCTCATATTGAGCGCATTATTCGAGATAAAGCAGCAACCATGGAATCACCTGTTGTGTCAGCATATGATACTAGGAATAGGTTTACTGTGAAAAGTTGCAGCATACTCAATGGAAGGCCGCGTCAAATTTGTGATATAGTGATACAAGTTGGGCAAGACTTGAAGATGTCTTGTAAGTTACATGAAGTGAAGTTGAAAATGCTTGGAGATCACCAACTTCAAAATGCAGCTACTGCTACTTGTGTGGCTCTTTGTCTTCGTAATTTAGGATGGAGTATTTCTGATGAATCTATTAGGTCTGGTTTAGAGCATACACACCTCCTTGGAAGGAGTCAATTTCTATCATCTGAAGAAGCAGAGGTATTAGGACTTACTGGAGCAACAGTATTACTTGATGGAGCTCATACCAAAGAATCCGCCAAAGCTCTGATGAATACAATCAAGACAGCATTTCCCAAGGCTCGATTGGTTTTTGTTGTTGCAATGGCGAGTGACAAAGACCATGTGGGTTTTGCTCGAGAGATTCTCTCAGGTGGGCATGTGGAGACTGTCCTTTTGACAGAAGCTGCTATTGCTGGAGGTGGAACTAGAACAACACCAGCATCTTTATTGAAAGATTCTTGGATTAAAGCTTCTGATGAGCTTGGCATTGAGATATTTCATGATGGAATGGCAGAATATGATGAATTAATAAATGAAGAGCAGGTAGGATCTGAAAGCAATTTGGGTGATGGTATGGCCATATTGTCTACCGAGTCATCTTTAAACAGTTGTTTGAAAACTGCAAATAAGATTCTAACCGGAAGAGGGGAAGAGGAAAAGGGTGTTATTGTCTTCACTGGATCTCTGCATATTGCATCTTCAGTCTTAGCCTCTCTTGCTGGTTAA 1614 0.4306 MLLSSIRRKFARGVWPIRTLSSNAEMEEFLDYLDSLKNFEKSGVPRGAGTDSDEGFDLGRMRRLMERFGNPHTKFKAVHIAGTKGKGSTAAFISNILRTEGYSVGCYTSPHILTIRERILLGRSGHPVSAKLLNDLFHRIKQELEQAMKEENGCISHFEVFTAMAYILFADENVDIAVIEAGLGGARDATNIISSSGLAAAVITTVGEEHLAALGGSLETIAMAKAGIIKQGCPLVLGGPFVPHIERIIRDKAATMESPVVSAYDTRNRFTVKSCSILNGRPRQICDIVIQVGQDLKMSCKLHEVKLKMLGDHQLQNAATATCVALCLRNLGWSISDESIRSGLEHTHLLGRSQFLSSEEAEVLGLTGATVLLDGAHTKESAKALMNTIKTAFPKARLVFVVAMASDKDHVGFAREILSGGHVETVLLTEAAIAGGGTRTTPASLLKDSWIKASDELGIEIFHDGMAEYDELINEEQVGSESNLGDGMAILSTESSLNSCLKTANKILTGRGEEEKGVIVFTGSLHIASSVLASLAG 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02469 537 ProSitePatterns Folylpolyglutamate synthase signature 1. 78 101 IPR018109 GO:0004326|GO:0005524|GO:0009396
Vimu1g02469 537 ProSitePatterns Folylpolyglutamate synthase signature 2. 178 193 IPR018109 GO:0004326|GO:0005524|GO:0009396
Vimu1g02469 537 PANTHER FOLYLPOLYGLUTAMATE SYNTHASE-RELATED 21 534 IPR001645 GO:0004326|GO:0005524|GO:0009396
Vimu1g02469 537 SUPERFAMILY MurD-like peptide ligases, catalytic domain 55 348 IPR036565 GO:0005524|GO:0009058
Vimu1g02469 537 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 362 535 IPR036615 GO:0009058|GO:0016881
Vimu1g02469 537 Gene3D - 16 349 IPR036565 GO:0005524|GO:0009058
Vimu1g02469 537 FunFam Dihydrofolate synthetase 44 349 - -
Vimu1g02469 537 Pfam Mur ligase middle domain 80 325 IPR013221 GO:0005524|GO:0009058|GO:0016881
Vimu1g02469 537 NCBIfam bifunctional protein FolC 58 533 IPR001645 GO:0004326|GO:0005524|GO:0009396
Vimu1g02469 537 Gene3D - 351 536 IPR036615 GO:0009058|GO:0016881
Vimu1g02469 537 Coils Coil 130 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02469 Vimu-Chr1 35811242 35820213 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02469 K20457 - gmx:100816933 885.945