Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02421 ATGGCCAAATCAAAACTTAGGTTTTCACTCACAAATATATCTACCACACCCTCGTCAACCACCATGCTCATACAAACTACTCTCTCCTTTGCATGCACTCCAAGAACTGTTCGCCACCGCAGCCTGCCACCGAAATGTGTTCTCTCAGTGTCCCCGCCATCAAAAGTGCGGAGGACACACTCATTGCCGCCGGAAAAGTTAGAGGTTTTCAGGTCACTGGAAGGATGGGCTTCGCAGTGTGTCCTACCGCTGCTGAAACCCGTGGAAAAAAGCTGGCAGCCCAACAGTTTCGTTCCCGACCCATCGTCGCCGTTTGAAGAGTTCATGGACGAGGTGAAGGCTCTTCGCGATCGAACCAAGGAGCTATCTGACGAGTACTTCTTGGTGCTGGTCGGTGACATGATCACAGATGAAGCTCTTCCCACTTACCAGACCATAATGAACAGCCTCGACGGCGTGAAAGACGACTGCGGAACAAGCCCAAGCCCGTGGGCTGTGTGGAATCGAGGCTGGTCCGCAGAAGAGAACAGACATGGAGATTTGCTCAGAACATACTTGTATCTTTCTGGTCGTGTTAATATGAACATGATTGAAAAGACCATTCATTACCTGATTGCTGCAGGCATGGAGGCTGGTTTTGAGAACAACCCATATCTGGGGTACGTGTACACATCATTCCAAGAGAGAGCCACGTTCGTGTCACATGGTAACACTGCTAAGCTCGCAAAGGAGGGTGGTGATCCTGTGCTGGCCCGCATATGCGGAACCATTGCTGCAGATGAGAAAAGACACGAGAAAGCGTACTCAAGGATCGTAGAGAAGCTTCTAGAAGTGGATCCCACGGGAGTAATGGTGGCAGTAGGAACCATGTTGGAGAAACGGATCACTATGCCGGCACATCTTATGTACGATGGGGAGGACCCCATGCTGTTCGAGCACTATGCTGCAGTGGCGCAACGTGTGGGAGTGTACACCGTAAATGACTATGCAGACATCTTGGAGTTCCTGATCGAGCGGTGGAGATTGGAGAAGGTGGAAGGTTTGACGGGGGAGGGAAAGAGGGCACAGGATTACGTGTGTGGGTTAGCACCGAGGATTAGGAAGCTGCAAGAACGCGCTGAGGAGCGAGCGCGAAAGATGAAACCTCGTAGCATGAAGTTCAGCTGGATCTTCCATAAAGAGCTGCATTTGTGA 1194 0.5109 MAKSKLRFSLTNISTTPSSTTMLIQTTLSFACTPRTVRHRSLPPKCVLSVSPPSKVRRTHSLPPEKLEVFRSLEGWASQCVLPLLKPVEKSWQPNSFVPDPSSPFEEFMDEVKALRDRTKELSDEYFLVLVGDMITDEALPTYQTIMNSLDGVKDDCGTSPSPWAVWNRGWSAEENRHGDLLRTYLYLSGRVNMNMIEKTIHYLIAAGMEAGFENNPYLGYVYTSFQERATFVSHGNTAKLAKEGGDPVLARICGTIAADEKRHEKAYSRIVEKLLEVDPTGVMVAVGTMLEKRITMPAHLMYDGEDPMLFEHYAAVAQRVGVYTVNDYADILEFLIERWRLEKVEGLTGEGKRAQDYVCGLAPRIRKLQERAEERARKMKPRSMKFSWIFHKELHL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02421 397 Coils Coil 105 125 - -
Vimu1g02421 397 FunFam Stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic 51 397 - -
Vimu1g02421 397 Pfam Fatty acid desaturase 65 391 IPR005067 GO:0006631|GO:0045300
Vimu1g02421 397 Gene3D Ribonucleotide Reductase, subunit A 51 397 IPR012348 GO:0016491
Vimu1g02421 397 CDD Acyl_ACP_Desat 65 373 IPR005067 GO:0006631|GO:0045300
Vimu1g02421 397 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Vimu1g02421 397 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 53 395 IPR005067 GO:0006631|GO:0045300
Vimu1g02421 397 SUPERFAMILY Ferritin-like 55 395 IPR009078 -
Vimu1g02421 397 PIRSF Dlt9_acylACP_des 15 397 IPR005067 GO:0006631|GO:0045300
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02421 Vimu-Chr1 35061656 35062967 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02421 3 397 Acyl Lipid Metabolism Gene Families AT1G43800 63.092 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02421 K03921 - gmx:100816146 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02421 1 35061656 35062967 Vimu1g02421 1 35061656 35062967 ECH