Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02420 ATGGCTTCTCTCCCATTCCTTTCGCAAATTTCCCACTCTCTTTCCTTTCCGCAACATGGCCACTGCTTCCATCGGCACTTCCCCACCGCTCTCGCTGCTTCCCACCAATCTGGAGCATCGTCTGGAAACTCATGGGGCGTTGACATTGCAGATTCTAAAATTCAAGTATCTCGTGTTCCGGTTTTGACGTCCTCGGAGGCCTATGAAAGGCTAAAATCATTTAGAGAAAAGATAAAGGGAAAGCAACAATTTCTTGCTATGTATTCTAGTATTTTTGATGGGATAACAACAGATCCAGCCGCTATGGTTATTCCTATGGATGACCACATGGTCCACAGGGGCCACGGTGTGTTTGATACTGCTGCAATAATGGACGGATACCTATATGAGCTAGATCAACACCTTGATCGCTTTTTAGGTTCAGCGTCCTTGTCTAAAATAGATCCCCCATTTGATCGTGGAAGCATAAGGAGAATACTGATACAAACTGTAAGTGCTTCCAAGTGTAGAAAAGGATCATTAAGATATTGGCTCTCTGCAGGACCTGGTGACTTTCAGTTATCTCCCTCTAACTGCCACCAATCAAGTCTTTATGCAATAGTAATACAGGACCTGTCATCATCGCTTAATTTCAGGGGAGTTAAAGTTGTTACTTCATCTGTTCCCATTAAACACCCCAAGTTTGCCATTACCAAGAGTGTGAATTATCTTCCAAATGTCCTCTCAAAGGTGGAAGCTGAAGAAGCTGGTGCTTTTGTAGGCATTTGGTTAGATGATGAAGGTTTTGTGGCAGAGGGGCCTAATATGAATGTGGCCTTTGTCACCAAAGAGAAAGAACTAATAATGCCTCACTTTGACAAAATTTTAAGTGGCTGCACAGCTAAGAGAGTTTTAACCCTTGCCGAGGATTTGTTAAGGGAGGGTAAGCTTAAGGAGATAAGGGTGAAAAATGTGACTGTTGAAGAAGGTAAAACAGCAGAAGAAATGATGCTTCTTGGCAGTGGAGTTCTTGTTTGCCCTGTAGTGCAGTGGGATGAACACGTTATTGGCAAAGAAGGCCCTGTAACACAGGCTCTCTTCAACCTAATTGTTGATGACATGAAATCAGGACCCTCTACCGTTCGTATACCTGTTCCTTATTGA 1143 0.4331 MASLPFLSQISHSLSFPQHGHCFHRHFPTALAASHQSGASSGNSWGVDIADSKIQVSRVPVLTSSEAYERLKSFREKIKGKQQFLAMYSSIFDGITTDPAAMVIPMDDHMVHRGHGVFDTAAIMDGYLYELDQHLDRFLGSASLSKIDPPFDRGSIRRILIQTVSASKCRKGSLRYWLSAGPGDFQLSPSNCHQSSLYAIVIQDLSSSLNFRGVKVVTSSVPIKHPKFAITKSVNYLPNVLSKVEAEEAGAFVGIWLDDEGFVAEGPNMNVAFVTKEKELIMPHFDKILSGCTAKRVLTLAEDLLREGKLKEIRVKNVTVEEGKTAEEMMLLGSGVLVCPVVQWDEHVIGKEGPVTQALFNLIVDDMKSGPSTVRIPVPY 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02420 380 CDD PLPDE_IV 108 363 - -
Vimu1g02420 380 Gene3D - 63 203 IPR043131 -
Vimu1g02420 380 PANTHER AMINO-ACID AMINOTRANSFERASE 61 372 - -
Vimu1g02420 380 FunFam D-alanine aminotransferase 206 370 - -
Vimu1g02420 380 FunFam D-amino-acid transaminase, chloroplastic 63 202 - -
Vimu1g02420 380 Pfam Amino-transferase class IV 116 343 IPR001544 GO:0003824
Vimu1g02420 380 Gene3D - 206 373 IPR043132 -
Vimu1g02420 380 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 92 368 IPR036038 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02420 Vimu-Chr1 35045520 35049558 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02420 K18482 - gmx:100794026 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02420 1 35045520 35049558 Vimu1g02420 1 35045520 35049558 ECH