Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02411 ATGCAGATACCACCCTGCAACTCCGTTACCACTCAAACACTTGTTCCACGGCCTTATACAACAAACTCATGCCACCGCCACCTCTTGCCACCGCCCAAAGCCGCCGTCTCCGCCGTCTGCACGGCGTCGCTGAAGGCTCGGAGGACCCACTCAATGCCTCCGGAGAAAATGGAGATTTTCAAGTCGTTGGAGGGCTGGGCCTCGGAGTGGGTCCTACCACTGCTAAAGCCCGTGGAGCGATGCTGGCAGCCTCAGGACTTGGTCCCTGACTCATCACTGCCGTTCGAAGAGTTCAGCGAGGAGGTTAAAGCCCTTCGCGAACGCACCAAGGAGCTCCCCGACGAGTACTTCGTGGTGTTGGTGGGTGACATGGTCACCGAAGACGCGCTTCCCACTTACCAGACCATGATCAACAACCTCGACGGCGTGAAAGACGACTGCGGAACCAGTCCAAGCCCGTGGGCCGTGTGGACCCGGGCCTGGACCGCGGAAGAAAACCGACACGGAGATTTGCTCAGAACTTATTTGTACCTCTCCGGTCGCGTTGACATGGCTAAGGTTGAGAAAACTGTCCATTACCTCATCGGAGCTGGCATGGACCCTGGAACAGAGAACAATCCTTATTTAGGGTTTGTGTACACTTCGTTCCAAGAGCGAGCAACTTTCGTGGCGCATGGGAACACTGCTCGGCTTGCGAAGGAAGGGGGTGATCCAGTGCTTGCGCGCATATGTGGAACCATTGCTGCGGATGAGAAGCGCCATGAGAATGCATATTCAAGGATTGTGGAGAAGCTTCTGGAAGTTGATCCCAGTGGAGCGATGGTTGCAATAGGAAACATGATGGAGAAGAAGATCACAATGCCGGCACATCTTATGTACGATGGGGACGACCCTAAGCTATTCGAGCATTACTCTGCAGTGGCCCAGCGATTGGGCGTGTACACAGCCAATGATTATGCAGATATCTTGGAGTTTCTGGTTGGACGGTGGAGATTGGAGGAGCTTGAAGGTTTGACGGGGGAAGGAAAGCGGGCACAGGATTACGTGTGTGGGTTAGCGCCTAGGATTAGGAAGTTGCAAGAACGCGCTGATGAGCGAGCGCGTAAGATGAAGGCGCAGAGTGTGAAGTTCAGTTGGGTCTTCAATAGGGAACTGCTTTTGTGA 1164 0.5438 MQIPPCNSVTTQTLVPRPYTTNSCHRHLLPPPKAAVSAVCTASLKARRTHSMPPEKMEIFKSLEGWASEWVLPLLKPVERCWQPQDLVPDSSLPFEEFSEEVKALRERTKELPDEYFVVLVGDMVTEDALPTYQTMINNLDGVKDDCGTSPSPWAVWTRAWTAEENRHGDLLRTYLYLSGRVDMAKVEKTVHYLIGAGMDPGTENNPYLGFVYTSFQERATFVAHGNTARLAKEGGDPVLARICGTIAADEKRHENAYSRIVEKLLEVDPSGAMVAIGNMMEKKITMPAHLMYDGDDPKLFEHYSAVAQRLGVYTANDYADILEFLVGRWRLEELEGLTGEGKRAQDYVCGLAPRIRKLQERADERARKMKAQSVKFSWVFNRELLL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02411 387 SUPERFAMILY Ferritin-like 43 386 IPR009078 -
Vimu1g02411 387 Pfam Fatty acid desaturase 55 381 IPR005067 GO:0006631|GO:0045300
Vimu1g02411 387 CDD Acyl_ACP_Desat 55 363 IPR005067 GO:0006631|GO:0045300
Vimu1g02411 387 ProSitePatterns Fatty acid desaturases family 2 signature. 305 324 IPR005803 GO:0006633|GO:0016491
Vimu1g02411 387 Gene3D Ribonucleotide Reductase, subunit A 40 387 IPR012348 GO:0016491
Vimu1g02411 387 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 41 385 IPR005067 GO:0006631|GO:0045300
Vimu1g02411 387 PIRSF Dlt9_acylACP_des 12 387 IPR005067 GO:0006631|GO:0045300
Vimu1g02411 387 FunFam Stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic 39 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02411 Vimu-Chr1 34927573 34928847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02411 8 385 Acyl Lipid Metabolism Gene Families AT1G43800 73.298 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02411 K03921 - gmx:100037478 668.692