Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02400 ATGGATGCTTCGTCTTCGTCGAGTCAACCCGAATTCGATTACTTGTTCAAGCTTCTCTTGATTGGGGATTCTGGCGTTGGCAAAAGCACCCTGCTTTTGAGCTTCACCTCCGATAATTTCGAGGATCTTTCTCCCACCATCGGTGTAGATTTCAAAGTTAAATATGTTACAATTGGAGGAAAAAAGTTAAAACTTGCTATTTGGGACACAGCGGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTATAGAGGAGCTCAAGGAATAATTTTGGTATATGATGTCACAAGGCGGGAAACTTTTACGAATCTATCTGATATATGGGCTAAAGAAATTGACCTTTACTCAACCAATCAAGATTGCATCAAGATGCTTGTAGGAAACAAAGTTGATAAGGAAAGTGAAAGGGTTGTCAGCAAAAATGAAGGGATAAACTTTGCAAGGGAATATGGATGTCTGTTTACTGAGTGCAGTGCAAAAACAAGAGTCAATGTTGCACAATGTTTTGATGAGCTTGTAATGAAGATTTTAGAGACACCAAGTCTCTTGGCTGAGGGCTCATCTGGTGGGAAAAAGAACATCTTCAAGCAGAAAGCACAAAATTCTGATGCTACAAGTGGTGGCTGCTGCTCATGA 639 0.4006 MDASSSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSDNFEDLSPTIGVDFKVKYVTIGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVSKNEGINFAREYGCLFTECSAKTRVNVAQCFDELVMKILETPSLLAEGSSGGKKNIFKQKAQNSDATSGGCCS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02400 212 SMART ran_sub_2 21 210 - -
Vimu1g02400 212 FunFam Ras-related protein RABC1 9 211 - -
Vimu1g02400 212 PANTHER RAS-RELATED PROTEIN RAB 15 193 - -
Vimu1g02400 212 Gene3D - 9 211 IPR027417 -
Vimu1g02400 212 ProSiteProfiles small GTPase Ras family profile. 8 212 IPR001806 GO:0003924|GO:0005525
Vimu1g02400 212 ProSiteProfiles small GTPase Rab1 family profile. 11 211 - -
Vimu1g02400 212 CDD Rab18 16 177 - -
Vimu1g02400 212 SMART ras_sub_4 13 180 - -
Vimu1g02400 212 ProSiteProfiles small GTPase Rho family profile. 9 178 - -
Vimu1g02400 212 SMART rab_sub_5 16 180 - -
Vimu1g02400 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 184 IPR027417 -
Vimu1g02400 212 NCBIfam small GTP-binding protein domain 14 172 IPR005225 GO:0005525
Vimu1g02400 212 PRINTS Transforming protein P21 ras signature 56 78 - -
Vimu1g02400 212 PRINTS Transforming protein P21 ras signature 120 133 - -
Vimu1g02400 212 PRINTS Transforming protein P21 ras signature 16 37 - -
Vimu1g02400 212 PRINTS Transforming protein P21 ras signature 155 177 - -
Vimu1g02400 212 PRINTS Transforming protein P21 ras signature 38 54 - -
Vimu1g02400 212 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Vimu1g02400 212 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02400 Vimu-Chr1 34767749 34771829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02400 17 113 EF-hand Containing Proteins AT5G27540 26.804 5.71e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02400 K07910 K17506 gmx:121173094 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02400 1 34767749 34771829 Vimu1g02400 1 34767749 34771829 ECH