Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02399 TTGCGCATCAGAACTGTAAAGCCTACACTTCCTCGTGACCCCTTCCCCTTCTCTTCCATTCGTTTTTCCTTCTTTCTTTCTCCTCTTCGCTTCTCTTCTCAGGTTTCCGTATTGCCACGCACCATGGTGAAGGAAACGGAGTACTACGATATCCTCGGGATCACTCCCTCTGCCTCCGAAGACCAAATTCGCAAGGCCTATTACCATAAGGCAATGCAAGTTCATCCCGATAAAAACCCGAACGATCCTCGCGCTGCCGAGAAGTTCCAGATATTGGGTGAAGCGTACCAAGTTTTGAGTGATCCGGTTCAGAGGAATTCGTACAATCAAAATGGGAAGCATTCTGTATCGAGGGAAACTATGCTTGACCCCATGGCTGTCTTCGCCCTGCTCTTTGGAAGTGAATTGTTTGAGGACTACATAGGGCATCTGGCTGTGGCATCAATGGCTTCTTCTGAGCTCGCTGATGAAAGTGAGGATCCTGATAAACTGAATGAGAAGTTAAAGGCAAGAAAGGATTCTTCCTACGAGCAGAATCTGAAGCAAGACGGCTTTCTCGTGCTGGTTAGTGAACTTTCAGCTGCCTTTATTTCATTTGGAGTAGACATGTTACATACAATCGGCTACATATATTCAAGACAGGCAGCACAAGAACTAGGGAAAAAGGCCATTTATCTTGGAGTGCCATTTTTGGCTGAATGGGTACGTAATAAAGGACATTTCTGGAAATCACAACTCACAGCTGCTAAAGGTGCTTATCAGTTAATTCAGCTTCAAGAAGACATCCGCAAGCAATTCAAAATGGATGGTAGTAGTGGCCCTGAAAATGATGTTGACTCTCACATTCGCCTCAATAAGGACACATTGATCAGTTCCTTGTGGAAGTTAAATGTAGTGGACATAGAAGTAACACTTGTACACGTGTGTCAAATGGTGCTAAAGGAAAACAATGTCAAGAAAGAGGAACTTAAAGTTCGGGCTACTGCTCTTAAAATTCTTGGGAAGATATTTCAGGACAAGTATCCAAAAGGAGAAACATTGAGGAAGAAGATTGCAGCTAATTCTGATGACGAAGGAAGCACTTCTGATTCTTCAGACGATGAATCGCCTAGAGCAATTTCCTATCGAACTCCCTTTTTCACGCAGGGTCTCGGTAGACTTTTCAAATGCCTCTGTGTTGGTGGTGGAGGTGATGAAGAAGCTACGGGTGGAAATGCTAAAGAAGTGTTGAGCGAAGAAGGTGTTGGTGGAGGTCATGAAGAAGTTATGGGTGGAGCTGCTGAAGAAGTGTTCAATGAAGAAGCTGTTGGTGGAGGTCATGAAGAATCTCTTGGTGGAGCTGCTGAAGAAGTGTTGAATGAAAAA 1365 0.4425 MRIRTVKPTLPRDPFPFSSIRFSFFLSPLRFSSQVSVLPRTMVKETEYYDILGITPSASEDQIRKAYYHKAMQVHPDKNPNDPRAAEKFQILGEAYQVLSDPVQRNSYNQNGKHSVSRETMLDPMAVFALLFGSELFEDYIGHLAVASMASSELADESEDPDKLNEKLKARKDSSYEQNLKQDGFLVLVSELSAAFISFGVDMLHTIGYIYSRQAAQELGKKAIYLGVPFLAEWVRNKGHFWKSQLTAAKGAYQLIQLQEDIRKQFKMDGSSGPENDVDSHIRLNKDTLISSLWKLNVVDIEVTLVHVCQMVLKENNVKKEELKVRATALKILGKIFQDKYPKGETLRKKIAANSDDEGSTSDSSDDESPRAISYRTPFFTQGLGRLFKCLCVGGGGDEEATGGNAKEVLSEEGVGGGHEEVMGGAAEEVFNEEAVGGGHEESLGGAAEEVLNEK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02399 455 SUPERFAMILY Chaperone J-domain 41 142 IPR036869 -
Vimu1g02399 455 MobiDBLite consensus disorder prediction 348 372 - -
Vimu1g02399 455 Pfam DnaJ domain 47 109 IPR001623 -
Vimu1g02399 455 ProSitePatterns Nt-dnaJ domain signature. 89 108 IPR018253 -
Vimu1g02399 455 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 42 359 - -
Vimu1g02399 455 ProSiteProfiles dnaJ domain profile. 47 112 IPR001623 -
Vimu1g02399 455 Pfam X-domain of DnaJ-containing 198 340 IPR026894 -
Vimu1g02399 455 PRINTS DnaJ domain signature 67 82 IPR001623 -
Vimu1g02399 455 PRINTS DnaJ domain signature 49 67 IPR001623 -
Vimu1g02399 455 PRINTS DnaJ domain signature 84 104 IPR001623 -
Vimu1g02399 455 Gene3D DnaJ domain 36 126 IPR036869 -
Vimu1g02399 455 CDD DnaJ 47 101 IPR001623 -
Vimu1g02399 455 SMART dnaj_3 46 104 IPR001623 -
Vimu1g02399 455 MobiDBLite consensus disorder prediction 436 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02399 Vimu-Chr1 34759608 34766076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02399 48 122 Miscellaneous Gene Families AT1G16680 41.558 2.56e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02399 - - gmx:100793811 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02399 1 34759608 34766076 Vimu1g02399 1 34759608 34766076 ECH