Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02297 ATGTCGATCTTCGAGTACAACGGAAGCGCCGTCGTGGCCATGGTCGGCAAGAACTGCTTCGCCATTGCCAGCGACCGAAGGCTCGGCGTTCAGCTCCAAACCATAGCCACCGATTTCCAACGCATTTCCAGGATTCACGATAAACTCTTCATCGCTCTCTCTGGACTCGCCACCGATGCTCAGACTCTGTATCAGCGTCTCGTTTTCCGGCACAAACTGTATCAGCTTCGTGAAGAGAGGGATATGAAACCGGAGACCTTTGCCAGCTTGGTCTCTGCCTTGCTCTATGAGAAAAGGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGACGATGACAAACCATTCATTTGCACAATGGATTGTCTTGGAGCAAAGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCCGAGTCCCTGTATGGTGCTTGTGAGTCAATGTTTAAGCCTGACATGGAACCAGAGGAGTTGTTTGAGACCATCTCCCAAGCACTGCTATCGTCTGTTGATCGTGATTGTTTAAGTGGTTGGGGAGGACATGTCTATGTTGTTAGTCAGCCTCACCACCCACGCATCTCGTCTGCAGCCGAGAGACATGGTGGAAGGTGCCCATACCAATTTAATAGGCACAAAGTTGACAAAGAACATAGAGTTGAACTTGAATTTTGA 684 0.4854 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISRIHDKLFIALSGLATDAQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLGDDDKPFICTMDCLGAKELAKDFVVSGTASESLYGACESMFKPDMEPEELFETISQALLSSVDRDCLSGWGGHVYVVSQPHHPRISSAAERHGGRCPYQFNRHKVDKEHRVELEF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02297 227 CDD proteasome_beta_type_3 6 189 IPR033811 GO:0019774|GO:0043161
Vimu1g02297 227 PANTHER METALLOPROTEASE TLDD 4 192 IPR023333 -
Vimu1g02297 227 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 196 IPR029055 -
Vimu1g02297 227 FunFam Proteasome subunit beta 1 198 - -
Vimu1g02297 227 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 193 IPR029055 -
Vimu1g02297 227 ProSitePatterns Proteasome beta-type subunits signature. 12 59 IPR016050 GO:0005839|GO:0051603
Vimu1g02297 227 Pfam Proteasome subunit 7 189 IPR001353 GO:0005839|GO:0051603
Vimu1g02297 227 ProSiteProfiles Proteasome beta-type subunit profile. 8 189 IPR023333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02297 Vimu-Chr1 33458625 33463025 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02297 K02735 - gmx:100499664 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02297 1 33458625 33463025 Vimu1g02297 1 33458625 33463025 ECH