LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g02285	ATGGGTACTTATGTTGAAGGAATCAAAGAGGAAGTTGTGCTATCTCCTGCGCATGCCCTTTCTTTGATTGCTACTGGAGAAGAGCATAGACACGTGGGTTCAAATAATTTCAATCTTGTTAGCAGTCGAAGCCACACTATTTTCACCTTGGTATGTCAAGACAATCTCCATATGCTTAAGATTTTAATGCATGCTTCTTTGTCAATTAAAACTCCAAAAGAATTTCTAACTATTGAAAGCAGTTCGCGAGGGGAAAATACAGGGGAAGAGGATGTGACATTGTCCCACCTGCACTTAATTGATCTTGCAGGTTCAGAAAGTTCTAAAGCTGAAACAACTGGTTTGCGGAGAAAAGAAGGTTCCTATATAAATAAAAGCTTGCTTACTCTTGGAACGGTAACCATTCCCGCCACTGCTTGCTTGGTCGAAGTCATCTTGAGGTGGTGGTTCCAAATTTGCCATTGTTTTGCCCTTTTGGCTTTGGTTGCATGTCTCTCCTTTCAGGAGCACTGA	513	0.4152	MGTYVEGIKEEVVLSPAHALSLIATGEEHRHVGSNNFNLVSSRSHTIFTLVCQDNLHMLKILMHASLSIKTPKEFLTIESSSRGENTGEEDVTLSHLHLIDLAGSESSKAETTGLRRKEGSYINKSLLTLGTVTIPATACLVEVILRWWFQICHCFALLALVACLSFQEH	170

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g02285	170	Gene3D	Kinesin motor domain	1	139	IPR036961	-
	Vimu1g02285	170	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	2	133	IPR027417	-
	Vimu1g02285	170	ProSitePatterns	Kinesin motor domain signature.	95	106	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
	Vimu1g02285	170	PANTHER	CENTROMERE PROTEIN E	2	133	IPR027640	GO:0003777\|GO:0007018
	Vimu1g02285	170	Pfam	Kinesin motor domain	2	54	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Vimu1g02285	170	Pfam	Kinesin motor domain	76	133	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Vimu1g02285	170	ProSiteProfiles	Kinesin motor domain profile.	1	170	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g02285	Vimu-Chr1	33241948	33249273	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g02285	1	133	Miscellaneous Gene Families	AT5G06670	64.662	2.59e-45	156

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g02285	K11498		-	gmx:100817131	186.808