Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02250 TTGAAACTCGTGTTTCTTGTCTCACCAGGGCAAAAGTCATGCGAGAGCGCCAGAGTTTTCACCATCGTCAACTATTGCAAGGAGACACTGTGGCCGGCGGTGACGCCGGGAGAAAACTTCAACGGCGGCGGTTTCGTCCTCAAACCGGGCCAATCCGCGGTATTCACGGCCCCGGTCAGTTGGAGCGGCCGCATTTGGGCTCGAACCGGTTGCAGATTCGACCAGAACGGAAACGGCCAGTGCCAAACCGGTTCATGCGGCACCACGTTGAAATGTTCGGCCTCGGGAAAAACGCCCGCTTCACTGGCGGAATTCACACTCGCGCAACCGGACTTCTACGACGTTAGCCTGGTGGACGGCTTCAACGTGCCCATCTCCATTAGGCCCATTAACGGAAAGGGAAACTGCTCCTCGGCGGGGTGCGACTCCGACCTCAGAACTACTTGCCCTAACGAACTGTCCGTTAAGGCTAACGGGAAGACGATTGGGTGCCGTAGCGCGTGTGACGTGTTTAACACGGACGAGTATTGCTGCAGAGGGAATTATGGGAACCCGTCCACTTGCAAACCCACCTTTTATTCCAAGAAGTTTAAGGAAGCTTGTCCCACTTCTTACAGTTATGCGTACGATGATCCAACCAGCATCTTCACTTGCTCAGGAACTGATTATGAATCGTCGGGTCGCGGTGGGGCTGGTGGGGCAGAGGTGACCAGTGGTGCAGGCGGCGTCACGGTGGGTCCGTCCGGGATGGTTGCAGTGGCGGAACCGCCGATTGAGGCGGGGCGAAGGGTGTCTTCTCCTGATACGACGGAACTGACTGTAGAGGTTCACCCTCATGAGGTCGTTGCTACTGGTCTGGTGACCGAACCCTCTCAGCCTCCACCTGATCAACCGATTATAGTGCATTCTTCTGAGTCACCTCCGGACTCAGAGATCCCCCTGTCGCACAAAAGGAAATCTCGTGGGGAGGGTAAGTCTTCTTCTAAGAAGGGTCGTCGCAGCGGGAGTTCCTCCTCTATTCCTTTGCCGGCCGGTATATTCGACCCTGCGTTTGATGCTGCCTCGCGATTGGAGGTGCGGGCCAGCTCATCACAACGGGCGGTCATCGAACCTTTATCCGAAGGAGAACTCTACGCCGCCGCTGTTGAAATGATGGCTCGAGGGGTTATGATGGCCGTAAACGCCCGGGAAAAAGGAAAAGTGCGAGAAGGCCGCGACTTGCTGCGGGAGCTGGCATTGGAGCAAGAAACGGTCGCTTCCCTTCGCCGCCAGGTGGAGTCTTTAGCCAAGGATCATGAGGAGTGTGGCGAAAAATACGCCAAGTTGCAAGCGGACTTGGAAGAGACCAAACTCCAGTTGACCACCTCCCAGACGGCCTTGTCGGCCGCCCATGTCCGCGAGACTGGTTTGGCTGAGGACAACCGCAAGCTGAAAGTTGAGGTGCGTTGTCTGGGCAAGAGGGGGGATGAACTGGCTGCCCAAAGCGAACGGCTGACCCAGGAACTACTCGCCGCCGGGACGGATCCCATGGCGTGGGTTAGACGACCGCAGATGTCATCCGCCCATGAGTTGATCCTAAGGGACGGGTCCCTTGGCTATTTTGCGGGTGAAGGCGGATAA 1620 0.5698 MKLVFLVSPGQKSCESARVFTIVNYCKETLWPAVTPGENFNGGGFVLKPGQSAVFTAPVSWSGRIWARTGCRFDQNGNGQCQTGSCGTTLKCSASGKTPASLAEFTLAQPDFYDVSLVDGFNVPISIRPINGKGNCSSAGCDSDLRTTCPNELSVKANGKTIGCRSACDVFNTDEYCCRGNYGNPSTCKPTFYSKKFKEACPTSYSYAYDDPTSIFTCSGTDYESSGRGGAGGAEVTSGAGGVTVGPSGMVAVAEPPIEAGRRVSSPDTTELTVEVHPHEVVATGLVTEPSQPPPDQPIIVHSSESPPDSEIPLSHKRKSRGEGKSSSKKGRRSGSSSSIPLPAGIFDPAFDAASRLEVRASSSQRAVIEPLSEGELYAAAVEMMARGVMMAVNAREKGKVREGRDLLRELALEQETVASLRRQVESLAKDHEECGEKYAKLQADLEETKLQLTTSQTALSAAHVRETGLAEDNRKLKVEVRCLGKRGDELAAQSERLTQELLAAGTDPMAWVRRPQMSSAHELILRDGSLGYFAGEGG 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02250 539 Coils Coil 411 452 - -
Vimu1g02250 539 PANTHER OS03G0233200 PROTEIN 16 224 IPR001938 -
Vimu1g02250 539 MobiDBLite consensus disorder prediction 286 344 - -
Vimu1g02250 539 SUPERFAMILY Osmotin, thaumatin-like protein 19 224 IPR037176 -
Vimu1g02250 539 Pfam Thaumatin family 24 224 IPR001938 -
Vimu1g02250 539 ProSiteProfiles Thaumatin family profile. 17 224 IPR001938 -
Vimu1g02250 539 CDD TLP-PA 19 223 - -
Vimu1g02250 539 SMART tha2 20 224 IPR001938 -
Vimu1g02250 539 Gene3D Thaumatin 19 226 IPR037176 -
Vimu1g02250 539 PRINTS Pathogenesis-related protein signature 43 52 IPR001938 -
Vimu1g02250 539 PRINTS Pathogenesis-related protein signature 77 106 IPR001938 -
Vimu1g02250 539 PRINTS Pathogenesis-related protein signature 64 75 IPR001938 -
Vimu1g02250 539 PRINTS Pathogenesis-related protein signature 19 31 IPR001938 -
Vimu1g02250 539 PRINTS Pathogenesis-related protein signature 111 127 IPR001938 -
Vimu1g02250 539 FunFam Thaumatin-like protein 1a 18 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02250 Vimu-Chr1 32455840 32468078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02250 3 221 Receptor kinase-like Gene Family AT5G38280 42.672 1.33e-51 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02250 - - gmx:100813659 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02250 1 32455840 32468078 Vimu1g02250 1 32455840 32468078 ECH