LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g02244	ATGAGGACCGTGGCCGAAGGATCCTTGGTAGAGAGGTCTGACGATGGCGAAAAGGAGAAGAAGAAGAAGCGCCGATCCAATCGTCGATCCAAGCAAAACACTTCTCCATCTACAGCATCTGAAGTGAACGAGGCCCAGGGGATGTTGCCAGATTCAGGGAAAATTGAAAAACCTACTCATGCATCCACTTCCTTGGAGGGTTCATTGAAGCAGGTCAATGTGGGTTCTTCTAACGAGCAAGGACTATCCAATGCATCAAATGTTGCTTTTACATCAATGCCCCCCATGCATATCAATGAGCAAGTGGAATCTGTTGATTTGCGAATTGTGCCCGTGTATGGTGGAGGAATTGATTCTAAATCATTTTCTGAGCCCGCTGGTTGCAGAGGGTCATCGGGAATTAATAAAAACAAGGACACAGTTCCTTGTGGTCCAATTCGAATTTGTGGCCAGAAATGTATTTTTACTCCACACTTGTCTTTAGAGGCTGTTGAGAAGGCATTAGAGGTTGGTAATGTGAAGGGCGATGTTTTTAAAGCTCTCTTTCATGTCAATGCTCACAATCGAGTTGAGGCCTACTGCAAAATTGACGGAGTGCCAACTGATGTTCTCATTAGTGGGATTCCAGCCCAGAATAGAGCTGTGGAAGGTGATATTGTTGCAGTTAAGATTGATCCCTTGCCATTATGGACAAAAATGAAAGGACCAAATGGGTCTTGTAACAACACTTCAACACAGGAAGGTAATCTTTTTACAGAAGATAATGATGTGGATGGTAAAGGGAAACATAAGGTAGATGCTGATCATTGGTCTGGCCTTTGCGGAAGCTATCCTGGTCAAAACAAGGAAGATGCTGATCAACAATCCATCTCCTATAAAAATGATTCTTTGACTGGAAAAGGAATTGTCTGCGATGATAATACCTCCCAGGGTTCTACTAACCATTTAGATCTACTTGGAGGAGCCAACAATGGCAGCATTAATGGACATCACCATGCTACTCCTGATTCCTTAAAGAGCAATTCTTGTAGTGGACAAGTTGAAGTAGTTAATGCTGTGGAAAAGATGTGTTTGTTGGTTAATTCTGTCCCTTCAAAAAGACCAACTGGCAGGGTGATCTCTATTATCGAGAGATCGCCTCGTCGGGAGGGTATTGTTGGTCATCTTAATGTGAAACAGTGGGCTTCTTATAAGGAAATAACCAAAAAGGACGTCAAGAAGAATAAGAACTTCGTTTCTGATAATGATTACATCCAGCTAATACCAACTGATCCAAAGTTTCCTAATATGATACTTCTTGTTAGAAAGTTACCCGAGTGCATTATGAAAAGGTTGAAAAGTGGTGACATGACAATTGAAATGGATCTGGTAGCTGCACAAATTGATGATTGGGTAGAAGAAAATCCTTTTCCCGAGGCCCATATCTTGCACGTTTTTGGAAGAGGTGGCGAAATTCAGACCCATTTAGATGCAATTTTGTTTCAGAATGCAATCTGTTTTTCTGAATTTCCTCCAGAAGCTATGTCCTGTCTTCCGTGTGTTCCTTGGGAGGTACCTCTGAAAGAAATTCAAAGTAGAAAAGATCTAAGAAATTTGTGCTTATTTACTATTGATCCTTCAACTGCCACTGATCTGGATGATGCTCTGTCAATTGAGAAGTTACCTAATGGGAATTATAGAGTAGGAGTCCACATTGCTGATGTATCATATTTTGTTTTACCTGGCACAGCCTTAGATAGTGAGGCTCAGTCTAGGTCAACAAGTGTATATATGTTGCAAAGGAAGTTACCTATGTTGCCTTCATTATTATCTGAGAATATTGGGTCACTTAGTCCTGGAGTGGATCGACTTGCTCTTTCTATGCTCCTGGATGTGAATCATGAGGGGGATGTTGTTGACCGTTGGATTGGTCGTTCTGTTATACACTCATGTTGTAAGCTTTCATATGACCATGCCCAGGACATCATTGATAGGGATTTTGATTTTGAAGGTTTAAAGAATACTGAAGATGGCTATCTCAGAGTGTATGGCCATTTTGAATGGCCTGATGTTATTATGTGTTTGAAGAGTCTGTATGAAATTTCAAATGTCTTGAAACGCAAGAGGTTTAGTGATGGGGCTCTACGGCTTGAGAACCCCAAAGTTGTTATCTTGTTTGATGAGAATGGAGTTCCTTATGATAGTAAGCTTTCTGAAAGGAAAGAATCAAATTTTCTTGTAGAGGAATATATGCTTTTGGCTAATAGAGTTGCTGCAGAAGTCATATGTCGAGCTTATCCTGATGCTGCATTGTTACGGCGACATCCTGAACCTAATATGCGAAAGATGAGAGAGTTTATGGCATTTTGTCAGAAGCATGGTTTAGAATTGAACACGACTTCCTCTGGTCAATTCAATTGGTCATTAGAGCAGATCAGGGAAAAGCTCAAGGGTGATCCTGTGCTTTACTATATACTTATTTCTTATGCTGCTAAGCCAATGCAGTTGGCTTCTTACTTCTGTAGTGGAGATTTGAAGGATAGTGAAAATGAATGGGGTCATTATGCTTTAGCTGTCCCATTTTACACTCATTTTACATCACCTCTGCGTCGGTATCCAGATATTATTGTTCACCGGACATTACTTGCTACCATAGAGGCTGAGGATTTGTATATGAAGCATCAAAAGGCTTTGCAGGGTCATAAGGAAATGGATACGGCGAAAAGATGTTTCACTGGTATCAATTTTGATAAAAGTGCTGCAGAATCCATCAAGGGAAGGGAAGCACTATCAGCTGCAGCTGTGAAGTATAGTGTTCCAGGTGGTGAAATACTTGCAAATATTGCTGTTCATTGCAATGAAAGAAAGCTAGCTAGTAGAAATGTTAAGGATGCCTGTGATAAACTTTACATATGGTTTCTCCTGAAGAAAAAGGAGGTCTTATTGTCAGAAGCTAGAATTATGGGACTTGGCCCAAGATTCATGTCAATTTACATTCAAAAGCTAGCTATTGAGCGACGCATATATTATGATGATGTGGAAGGCTTGAGTGCAGAATGGCTTGAAACAACATCGACGTTGGTGCTAAGCATGTCAACTACTAATAGGTGTAGTTTTAGGAGGGGCTGGTCTAACAAGTGGAGGGCGATTGAAGAAGTTGCACTGCTTTCTTGTCCATATAACCTGAAAATTACCACGGATAATTCTAACCAGAGTGATGCGGAGACTGAAATTGACCCCTTAGTTTTTCCGCTGACAGTGCATGTTCTTTCAACAATTCCAGTGGCTCTTCATGCTGTTGGTGGTGATGATGGGCCCCTTGATATTGGAGTAAGGCTCTACATGAGCTCCTATTTTGGGTGA	3342	0.4108	MRTVAEGSLVERSDDGEKEKKKKRRSNRRSKQNTSPSTASEVNEAQGMLPDSGKIEKPTHASTSLEGSLKQVNVGSSNEQGLSNASNVAFTSMPPMHINEQVESVDLRIVPVYGGGIDSKSFSEPAGCRGSSGINKNKDTVPCGPIRICGQKCIFTPHLSLEAVEKALEVGNVKGDVFKALFHVNAHNRVEAYCKIDGVPTDVLISGIPAQNRAVEGDIVAVKIDPLPLWTKMKGPNGSCNNTSTQEGNLFTEDNDVDGKGKHKVDADHWSGLCGSYPGQNKEDADQQSISYKNDSLTGKGIVCDDNTSQGSTNHLDLLGGANNGSINGHHHATPDSLKSNSCSGQVEVVNAVEKMCLLVNSVPSKRPTGRVISIIERSPRREGIVGHLNVKQWASYKEITKKDVKKNKNFVSDNDYIQLIPTDPKFPNMILLVRKLPECIMKRLKSGDMTIEMDLVAAQIDDWVEENPFPEAHILHVFGRGGEIQTHLDAILFQNAICFSEFPPEAMSCLPCVPWEVPLKEIQSRKDLRNLCLFTIDPSTATDLDDALSIEKLPNGNYRVGVHIADVSYFVLPGTALDSEAQSRSTSVYMLQRKLPMLPSLLSENIGSLSPGVDRLALSMLLDVNHEGDVVDRWIGRSVIHSCCKLSYDHAQDIIDRDFDFEGLKNTEDGYLRVYGHFEWPDVIMCLKSLYEISNVLKRKRFSDGALRLENPKVVILFDENGVPYDSKLSERKESNFLVEEYMLLANRVAAEVICRAYPDAALLRRHPEPNMRKMREFMAFCQKHGLELNTTSSGQFNWSLEQIREKLKGDPVLYYILISYAAKPMQLASYFCSGDLKDSENEWGHYALAVPFYTHFTSPLRRYPDIIVHRTLLATIEAEDLYMKHQKALQGHKEMDTAKRCFTGINFDKSAAESIKGREALSAAAVKYSVPGGEILANIAVHCNERKLASRNVKDACDKLYIWFLLKKKEVLLSEARIMGLGPRFMSIYIQKLAIERRIYYDDVEGLSAEWLETTSTLVLSMSTTNRCSFRRGWSNKWRAIEEVALLSCPYNLKITTDNSNQSDAETEIDPLVFPLTVHVLSTIPVALHAVGGDDGPLDIGVRLYMSSYFG	1113

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g02244	1113	Pfam	RNB domain	526	878	IPR001900	GO:0003723\|GO:0004540
	Vimu1g02244	1113	ProSitePatterns	Ribonuclease II family signature.	847	871	IPR022966	-
	Vimu1g02244	1113	SUPERFAMILY	Nucleic acid-binding proteins	152	378	IPR012340	-
	Vimu1g02244	1113	SUPERFAMILY	Nucleic acid-binding proteins	486	970	IPR012340	-
	Vimu1g02244	1113	SMART	RNB_2	526	880	IPR001900	GO:0003723\|GO:0004540
	Vimu1g02244	1113	Gene3D	-	149	250	-	-
	Vimu1g02244	1113	SUPERFAMILY	Nucleic acid-binding proteins	369	498	IPR012340	-
	Vimu1g02244	1113	FunFam	DIS3-like exonuclease 2	402	484	-	-
	Vimu1g02244	1113	Gene3D	-	400	484	-	-
	Vimu1g02244	1113	MobiDBLite	consensus disorder prediction	7	21	-	-
	Vimu1g02244	1113	MobiDBLite	consensus disorder prediction	31	45	-	-
	Vimu1g02244	1113	FunFam	DIS3-like exonuclease 2	145	252	-	-
	Vimu1g02244	1113	Hamap	DIS3-like exonuclease 2 [DIS3L2].	11	1088	IPR028591	GO:0000175\|GO:0034427
	Vimu1g02244	1113	MobiDBLite	consensus disorder prediction	1	67	-	-
	Vimu1g02244	1113	Pfam	Dis3-like cold-shock domain 2 (CSD2)	417	496	IPR041505	-
	Vimu1g02244	1113	PANTHER	RIBONUCLEASE	21	1110	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g02244	Vimu-Chr1	32364514	32369910	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g02244	K18758		-	gmx:100817387	1789.24

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu1g02244	1	32364514	32369910	Vimu1g02244	1	32364514	32369910	ECH