Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02204 ATGAGTCCCTACATTTTCGGAGTCATACTCCCTCTCCTCGTCACGCTTCTCGTACGCAACAAGAATCCTCCCAAAAAACGTGGCGTTCCGGTCCAAACCGGCGGCGAGGCCGGTCTGGCTATCCGAAACAGCCGGTTTGAGTCCCCGGTCCAGAGCGCGTGGGAAGGCGTTGCTACGCTCGCAGAGCTCTTCGAAGAGGCGTGCAAAACGCATGCCGAGAGGCTCCTCCTTGGCACGCGCGTGGTGTTGGCGAGGGAAGTGGAGAGCGGCCCCGACGGCAGGTCGTTCGAGAAGCTTCACTTGGGAGACTACGGTTGGCTCTCCTACGATACGGTTTTCGATGTCGTTTCGAGCTTCGCTTCCGGGTTAGCCTTCCTCGGACATGCCAGGGAGGAACGCGCCGCCATCTTCGCTGACACGCGCCAAGAGTGGTTTATGGCTCTTCAGGGTTGTTTCAGGCGAAATGTGACAGTAGTTACTATGTATGCATCATTGGGAGAGGAAGCTTTATCATATTCATTGAATGAGTTTGTGTGCTCTTTGTTTTGGTACGAACTCACTTTCAAAAGCCTTTTCCAGACAGAGGTTACAACAGTAATTTGTGGGCGAAAAGAAATGAAAACACTAGTAAATATAAGTGGACAACTTGACACAGTGAAACGTGTGATTTGCATGGATGATGATATCCCATCTGATGCCTCTTCTATTGCGTATAACTGGACAATCACTTCGTTCTCTGAGGTTGAGAGACTTGGCAGAGAAAACCCTGTTGAAGCTGATTTACCACTTTCAGCAGATGTTGCAGTTATAATGTATACAAGTGGAAGTACAGGATTACCCAAGGGTGTGATGATGACACATGGCAATGTCTTAGCTACACTCTCTGCTGTGATGACCATTGTTCCTGATATTGGGACCAAGGATATATATCTTGCATACTTGCCGATGGCTCATATCTTAGAATTAGCAGCTGAGAATTTGATGGCAGCTGTTGGAGTTCCTATAGGATATGGATCTCCTTTGACCCTTACTGACACATCAAACAAGATTAAGAAAGGAACAAAGGGGGATGCTACTGCACTGAGTCCAACTCTAATGGCAGCTGTACCAGCAATTCTTGATCGTGTTCGTGATGGAGTGTTCAAGAAGGTCCGAGCTATTCTAGGAGGCCGTATCCGTTTTATACTATCTGGTGGTGCTCCCCTTTCTGGTGATACCCAGAAGTTCATCAACATTTGTCTCGGGAAAGTCCACTTGAAGTCCCCAAGAACCCAAGACACAAAAGAGAAACAAGCTCCCAAGAAAGTCTTGGAAGATGATTGGATCTTTTTGGCCATCTATTTTGTAGGGTTTTGCTGCAGAAAGGAATGGCCAAATAGTCTAGGTATGGGGTTTTGGGTGGCTAAGATCCTTGAGGGTCTCTTGAGACTCTTCTTGGAGAGTCCAAGAAGACAAGAGGAGAGGATCTTGGGAAAACTCAACCAAGCTCATTCTTCTCACAAAAGAACTTCACTCTCAAGTTTTCAAGTTAAAGTGTATTCTACTATAAAATGTGCTCCAATCGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGACACTTCTGTTGGTCGTGTTGGACCACCTCTTCCATGCTCATTTATTAAGCTAATCAACTGGCCTGAAGGTGGATATTTAACAAATGACTCACCAATGCCCCGTGGAGAAATTGTAATTGGTGGTCCAAATGTCACTCTAGGGTATTTCAAAAATGAAGAAAAAACGAATGAATCATACAAGGTTGATGAAAGAGGCATGAGGTGGTTTTACACTGGTGACATTGGCAGATTTCATCCAGATGGATGCCTTGAAATCATTGACCGTAAAAAGGACATTGTTAAACTGCAGCATGGAGAATATGTCTCCTTGGGAAAGGTTGAGGCAGCTCTTATTGTTAGTCCCTTTGTGGACAATATTATGGTCCATGCTGACCCTTTCCACAATTACTGTGTGGCACTTGTGGTGGGTTCTCAGTTCACATTGGAGGAATGGGCTTCACAACAAGGAATTTCATATATCAATTTTTTAGATCTGTGTGCAAAAGAAGAAACTGTGAAGGAGGTACATGCATCACTTTTAAAGGAGGGAAAGAAGGCTCATCTGGAGAAATTTGAGATTCCTGCAAAAATTAAACTGCTTTCTGATCCATGGACCCCTGAGTCTGGCCTTGTCACTGCTGCTCTCAAACTCAAGAGGGAGGCAATAAAAAAGACTTTTAATGAGGAACTTACAAAGTTGTATGCTTCATAG 2313 0.4518 MSPYIFGVILPLLVTLLVRNKNPPKKRGVPVQTGGEAGLAIRNSRFESPVQSAWEGVATLAELFEEACKTHAERLLLGTRVVLAREVESGPDGRSFEKLHLGDYGWLSYDTVFDVVSSFASGLAFLGHAREERAAIFADTRQEWFMALQGCFRRNVTVVTMYASLGEEALSYSLNEFVCSLFWYELTFKSLFQTEVTTVICGRKEMKTLVNISGQLDTVKRVICMDDDIPSDASSIAYNWTITSFSEVERLGRENPVEADLPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATLSAVMTIVPDIGTKDIYLAYLPMAHILELAAENLMAAVGVPIGYGSPLTLTDTSNKIKKGTKGDATALSPTLMAAVPAILDRVRDGVFKKVRAILGGRIRFILSGGAPLSGDTQKFINICLGKVHLKSPRTQDTKEKQAPKKVLEDDWIFLAIYFVGFCCRKEWPNSLGMGFWVAKILEGLLRLFLESPRRQEERILGKLNQAHSSHKRTSLSSFQVKVYSTIKCAPIGQGYGLTETCAGGTFSDVDDTSVGRVGPPLPCSFIKLINWPEGGYLTNDSPMPRGEIVIGGPNVTLGYFKNEEKTNESYKVDERGMRWFYTGDIGRFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALIVSPFVDNIMVHADPFHNYCVALVVGSQFTLEEWASQQGISYINFLDLCAKEETVKEVHASLLKEGKKAHLEKFEIPAKIKLLSDPWTPESGLVTAALKLKREAIKKTFNEELTKLYAS 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02204 770 Gene3D - 485 637 IPR042099 -
Vimu1g02204 770 Pfam AMP-binding enzyme 101 416 IPR000873 -
Vimu1g02204 770 Pfam AMP-binding enzyme 513 637 IPR000873 -
Vimu1g02204 770 SUPERFAMILY Acetyl-CoA synthetase-like 57 415 - -
Vimu1g02204 770 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 380 768 - -
Vimu1g02204 770 SUPERFAMILY Acetyl-CoA synthetase-like 514 768 - -
Vimu1g02204 770 ProSitePatterns Putative AMP-binding domain signature. 270 281 IPR020845 -
Vimu1g02204 770 Gene3D - 80 421 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02204 Vimu-Chr1 31589426 31604828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02204 519 769 Acyl Lipid Metabolism Gene Families AT1G77590 79.681 5.11e-146 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02204 K01897 - gmx:100803677 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02204 1 31589426 31604828 Vimu1g02204 1 31589426 31604828 ECH