Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02197 ATGGAGTTTTCTACCCTTTTCAACCCTCTTGTCTCTGCACTTGCACTTTTGTTCATTGCTACAACTTCACTCAACCCTGCAGCGGCGGCCTCAAAACGCTGTGATTTCCCGGCCATCTTTAACTTTGGTGCCTCAAACGCTGACACTGGTGGCTTGGCTGCTTCCTTCCCTTTTGCTGGACCAAGACCACCCACACAGAGATTTGGACTCCCTTATCTCAGTCCATATCTTGATTCAATGGGGTCCAACTTCTCACGTGGAGCAAATTTTGCAACAGCAGGATCAACAATCAGATTCCAACAAGCTGGAGGGCAGTATAGAAGCAGTCCTTTCAGCCTTGGAATTCAGTACCAGCATTTCGAACGTTTTAAATCTACTACGAAGTTCATTAGGGACCAAGGTGGGGTGTTTGCAGCACTGATGCCCAAAGAAGAATACTTTGACGAAGCTTTGTACACATTTGATATAGGTCAAAATGATCTCACAGTTGGGTTTTTTGGTAACATGACTCTTCAACAAGTTAATGCGTCTATACCTGATATAATATCGAACTTCACATCAAATATAAAGAACATATACAATTTGGGGGCTAGATCATTTTGGATTCACAACACTGGACCTATTGGTTGTCTTCCTTTGATTTTGACCAATTTTGAATCCGCTGAAAGGGATAAGTATGGTTGTGCAAAGGCATACAATGAAGTGGCTAATTCTTTTAACCTAAAATTGAAGGAAGCCTTGGCTCATCTTCGTAAGGACCTTCCTACGGCTGCAATTACATATGTAGATATCTACTCTGCTAAGTACTCTCTTTTCAGAGACCCAAAGAAATATGGATTTGAGCTTCCACTTGCTGCTTGTTGTGGCTATGGAGGGAAGTACAACTTCAGCAATAGTGTTGGATGTGGAGGAACCATTAAGGTCAACGACAATGATGTTTTTGTAGGTTCTTGTGAAAGACCATCTGATAGAGTGATATGGGATGGGATCCACTACACTGAAGCAGCTAACAAAGTTGTCTTCGATCAAATCTCTTCTGGGGCTTTCACAGATCCACCCATTCCATTGAATTTGGCATGTCACAGAAAATAG 1092 0.4231 MEFSTLFNPLVSALALLFIATTSLNPAAAASKRCDFPAIFNFGASNADTGGLAASFPFAGPRPPTQRFGLPYLSPYLDSMGSNFSRGANFATAGSTIRFQQAGGQYRSSPFSLGIQYQHFERFKSTTKFIRDQGGVFAALMPKEEYFDEALYTFDIGQNDLTVGFFGNMTLQQVNASIPDIISNFTSNIKNIYNLGARSFWIHNTGPIGCLPLILTNFESAERDKYGCAKAYNEVANSFNLKLKEALAHLRKDLPTAAITYVDIYSAKYSLFRDPKKYGFELPLAACCGYGGKYNFSNSVGCGGTIKVNDNDVFVGSCERPSDRVIWDGIHYTEAANKVVFDQISSGAFTDPPIPLNLACHRK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02197 363 Gene3D SGNH hydrolase 26 348 IPR036514 -
Vimu1g02197 363 SUPERFAMILY SGNH hydrolase 150 344 - -
Vimu1g02197 363 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 23 353 - -
Vimu1g02197 363 CDD SGNH_plant_lipase_like 37 347 IPR035669 -
Vimu1g02197 363 Pfam GDSL-like Lipase/Acylhydrolase 39 344 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02197 Vimu-Chr1 31422827 31425705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02197 37 358 Acyl Lipid Metabolism Gene Families AT4G10950 24.576 3.19e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02197 - - gmx:100818460 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02197 1 31422827 31425705 Vimu1g02197 1 31422827 31425705 ECH