Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02182 ATGAATGCGATCTTCACTGCTTCAGCTCTCTCTCTTCCAATTTTCCTTAGAGCTTCCAAATTTGACACAAGAAGGGATTTGAAATGTAGATTTAAAGTGTTTGCTGTATTTGGAGAAGAAGACAAGAAAAATGCATGGGGTGCGCTGTTTGATGTTGAGGATCCAAGATCCAAGATTCCACAGAATAAAGGGAAGGTTTTGGATATATATCAGGCCCTGGAAGTTGCAAGACATGATATTCAGTACTTAGACTGGCGAGCTCGGCAAGATGTGCTCACAATCATGCTCCTCCATGAAAAGGTGGTTGAAGTTCTTAATCCTCTAGCTCGTGAATATAAATCGATTGGCACCTTGAAAAAGGAGCTAGCTGGGTTGCAGGATGAGTTAGCACACGCACATAGACAGGTTCATATATCTGAAGCAAGGGTTACCACTGCTTTAGATAAGCTTGCTTACATGGAAGAATTGGTAAATGATAGGCTGTTGCAAGACAGAAGCACAGCTGAAATTGCCCAAACATCATCTTCTCCCAGTACGTCTGCAAATTCTCTACCTACAGAAAAGAGAAGAAAGTCACGGAAAAGCTTGAACGTATCAGGCCCAGTTCAGTCATACCATCCCCACTTGAAGAATTTCTGGTATCCTGTTGCTTTCTCCAAAGACCTAAAGGATGATACAATGATCCCAATAGAATGTTTTGAGGAACCATGGGTTATCTTCAGAGGGAAAGATGGAAAGCCTGGATGTGTCCAGAATACTTGTGCACACAGAGCCTGTCCTCTGCACCTGGGTTCAGTAAATGAGGGTCGTATCCAATGCCCCTACCATGGCTGGGAATATACCACTGAAGGAAAATGTGAGAAAATGCCATCTACTCGATTTCTAAATGTGAAAATAAAGTCAGTTCCATGCTTTGAAAAGGAGGGAATGATCTGGATTTGGCCTGGAAATGATCCGCCAACGGCTACACTTCCATCTTTACTACCGCCTTCTGGATTTGAAATCCATGCCGAGATTGTGATGGAACTTCCAATCGAACATGGTTTACTTTTGGACAATCTTTTGGATCTTGCCCATGCCCCTTTTACTCACACCTCAACATTCGCTAAGGGATGGAGTGTTCCCAGCTTGGTGAAGTTTTTGACACCTGCATCTGGCCTGCATGGATACTGGGACCCTTATCCTATTGATATGGAGTTTCGACCACCTTGCATGGTTTTATCAACCATTGGAATTTCAAAGCCTGGGAAACTGAGGGGACAAAATACCAGGGAATGTTCAACGCACCTGCACCAACTTCATGTCTGTTTACCATCTTCGAAACAAAAGACAAGATTGCTATATAGAATGTCACTGGATTTTGCTCCCCTGCTTAAGCATATACCTTTTATTCAGTATCTATGGAGGCATTTCGCAGACCAGGTTATAAATGAGGATCTGCGGTTAGTGGTGGGGCAACAGGAACGAATGAACGATGGTGCAAATGTATGGAATTTTCCAGTACCCTATGATAAGCTTGGGGTGAGATACAGAATGTGGAGAGATGCATTGGAGAGAGGAGATAAACAACTACCATTCACATCATATACATCAAATACAGAATAG 1605 0.4287 MNAIFTASALSLPIFLRASKFDTRRDLKCRFKVFAVFGEEDKKNAWGALFDVEDPRSKIPQNKGKVLDIYQALEVARHDIQYLDWRARQDVLTIMLLHEKVVEVLNPLAREYKSIGTLKKELAGLQDELAHAHRQVHISEARVTTALDKLAYMEELVNDRLLQDRSTAEIAQTSSSPSTSANSLPTEKRRKSRKSLNVSGPVQSYHPHLKNFWYPVAFSKDLKDDTMIPIECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTEGKCEKMPSTRFLNVKIKSVPCFEKEGMIWIWPGNDPPTATLPSLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLHGYWDPYPIDMEFRPPCMVLSTIGISKPGKLRGQNTRECSTHLHQLHVCLPSSKQKTRLLYRMSLDFAPLLKHIPFIQYLWRHFADQVINEDLRLVVGQQERMNDGANVWNFPVPYDKLGVRYRMWRDALERGDKQLPFTSYTSNTE 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02182 534 Gene3D - 336 524 - -
Vimu1g02182 534 Pfam Rieske [2Fe-2S] domain 213 294 IPR017941 GO:0051537
Vimu1g02182 534 MobiDBLite consensus disorder prediction 167 200 - -
Vimu1g02182 534 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 213 313 IPR017941 GO:0051537
Vimu1g02182 534 Coils Coil 115 135 - -
Vimu1g02182 534 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 254 276 IPR015881 GO:0005506|GO:0051537
Vimu1g02182 534 MobiDBLite consensus disorder prediction 167 185 - -
Vimu1g02182 534 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 100 520 - -
Vimu1g02182 534 SUPERFAMILY ISP domain 208 318 IPR036922 GO:0051537
Vimu1g02182 534 CDD Rieske_RO_Alpha_Cao 196 324 - -
Vimu1g02182 534 SUPERFAMILY Bet v1-like 309 519 - -
Vimu1g02182 534 Gene3D - 207 329 IPR036922 GO:0051537
Vimu1g02182 534 Pfam Pheophorbide a oxygenase 400 495 IPR013626 GO:0010277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02182 K13600 - gmx:100820586 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02182 1 31183747 31188534 Vimu1g02182 1 31183747 31188534 ECH