Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02064 ATGTCTATGGATCTAAAGAAATCTAACAAGATCAGAGAAATTGTTAGACTTCAACAGATCCTCAAAAAATGGAGAAGGTTAGCCAATTCTTCAAAAGCCACTGGGTCAAGCAATGTTGTTCCAAAAGGCTACCTAGCTGTTTGTGTTGGTGAAGAGCTCAAGAGGTTCACTATACCAACTGAGTATTTGGGTCACCAAGCGTTTCAGGTTCTTCTCAGAGAAGCAGAAGAAGAATTTGGCTTTCAACAAACAGGTGTGCTCAGGATTCCTTGTGAAGTTGCTGCTTTTCAGAGTATCTTGAAGATGGTGGAAAGTAAAGGGGACATGTTTTCCTCCCAAGAATGTAGACTCAGCATTGAAGAGATGCTGATGGGTTACTGCTCAGAAAACCAGATTGCACATTCTCACCATCCTCAAAGTCCATTATGCAGATAG 435 0.4138 MSMDLKKSNKIREIVRLQQILKKWRRLANSSKATGSSNVVPKGYLAVCVGEELKRFTIPTEYLGHQAFQVLLREAEEEFGFQQTGVLRIPCEVAAFQSILKMVESKGDMFSSQECRLSIEEMLMGYCSENQIAHSHHPQSPLCR 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02064 144 Pfam Auxin responsive protein 16 103 IPR003676 GO:0009733
Vimu1g02064 144 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 28 99 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02064 Vimu-Chr1 29017855 29018379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02064 3 144 Calmodulin-binding Proteins AT4G31320 47.619 6.76e-52 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02064 K14488 - gmx:100799598 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02811 10 39474259 39474810 Vimu1g02064 1 29017855 29018379 PCT