Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01998 ATGCCGGGATCATCATCTTCAGAGAAAAATGTAGTTGATTCTTCAGGTTGTGCCGATGCTGTGAGCGTCCATAATTTGAAAACAGTTGGCTCTAGGGTATCAAATCATGTTATCAACCCTAGTAGCACCTCGGAGTTAGCTGAAAGTATACGTCAGTCATTTGCTGATACGAAATGTGGGAATAAAGGCATCCAGTCTGGAACTGTTACTTCATCTAGGGTTGTTGGCTCTCCAAAGTCTAATGACAAGATAAAATGCATGAAGTGTGGAGGGAAATCTGAGCGTCAAGAAAGGATGATGGATCTGACTGTTGAGATAGATGGGGAGATAGCAACCCTGGAGGATGCCCTTCGACAGTTTACAACTGCCGAGACTCTGGATGGGGAAAACAAGTACAACTGTGTCAGGTTGGTTTCAAATATTATCATTGCTTGCTGTTGTTTTCAATATTATATAACTCAACTGGCCCAAAGAATATGTTGGTAG 486 0.4218 MPGSSSSEKNVVDSSGCADAVSVHNLKTVGSRVSNHVINPSSTSELAESIRQSFADTKCGNKGIQSGTVTSSRVVGSPKSNDKIKCMKCGGKSERQERMMDLTVEIDGEIATLEDALRQFTTAETLDGENKYNCVRLVSNIIIACCCFQYYITQLAQRICW 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01998 161 Gene3D Cysteine proteinases 18 154 - -
Vimu1g01998 161 SUPERFAMILY Cysteine proteinases 82 136 IPR038765 -
Vimu1g01998 161 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 78 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01998 Vimu-Chr1 26961843 26963537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01998 83 136 Miscellaneous Gene Families AT2G24640 48.148 1.26e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01998 K11855 - gmx:100815856 106.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01998 1 26961843 26963537 Vimu1g01998 1 26961843 26963537 ECH