Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01964 TCTCTTCCATATCATCTCACCTTCCACACTCTCTTCCTTCATTCTCTTCATTCCAACTTTACCTTCTCCCCCATTCCCACTCTAACCAATCAAACCCCACAAATCCAATACCCTATCAACCAATCAAAGATTCCATCTTTTGAATCCAAAGCCACTGTCCCAGATCAAACAACCCCAACACAAAACATCATCCACCCACTTCAACAAATGAGAGAGAACCATCCTTCCACAAACTCCGAGGAAGACCAGCGATCCTCCGTGCTGGATCTGGCGCGAGCCGAAATCACGGAATCCTCCACCTCCAAGACCCGAAACTATGGCGGGTTTCCGGATCCGGCTTCCGGGTCGGGTCCATCGGAGCCGCAGGCTCCGTTCCCGGACCAGGTGCTGGAGAACGTGCTGGAGAACGTGCTCCACTTCCTCTCCTCGCGCCGCGACCGCAACGCCGCCTCATTGGTGTGCCGCTCCTGGTACCGCGCGGAGGCCCTCACCCGATCCGAGCTCTTCATCGGGAACTGCTACTCTCTCTCTCCCGCCCGCGCCACCACGCGTTTCACGCGCGTCAAGTCCGTCACGGTGAAGGGTAAGCCGCGCTTCGCGGACTTCGATCTGATGCCACACGATTGGGGGGCCCACTTCACGCCTTGGGCCAGCGCTCTGGCCCAGGCCTACCCCTGGCTGGAGAAGCTCCATCTCAAACGCATGACCGTCACGGACGACGACCTCGACCTCATCGCCGACTCCTTCTCAGGCTTCCGCGAACTCGTCCTTGTCTGCTGCGAGGGCTTCAGCACTCACGGTCTCGCCTCCGTCGCTGCCAAGTGCAGACTGCTGAGGGTGCTTGAGCTGGTCGAATCTGTTGTGGACTCTGAGGACGAGGAGGAGATTGCAGATTGGATTTTATGTTTCCCCGAGAGCCAAACCAACATGGAGTCTCTTGTGTTTGATTGTGTTGAGTGTCCTATTAATTTCGAGGCTTTGGAGAGTTTGGTGGCTAGGTCGCCTCGTTTGAAGAAGCTTCGGTTGAACCGATATGTTTCCATGGCTCAGCTGCATCGTTTGCTACTTCGAGCCCCGCAGCTTACTCACCTTGGAACAGGCTCCTTCAGCGCTGCTGAGCCCGGGGTGGTTGGTGAGCTGGAACCGGATTACACGGCAGCGTTTGAGGCCTGTAGATCCTTGGTTTGCCTGTCTGGATTCAGGGAGATTTGGGCGGATTACCTTCCCGCGATTTATCCGGTCTGCGCCAATCTGACCTCGTTGAATTTGAGCTATGCCGATGTTAACGCGCAGCAGCTGAAGGCAGTCATTCGCCACTGTCATAAGCTACAGATATTCTGGGTACTTGATTCGATATGTGATGAAGGACTTCAGGCAGTGGCTGCTACTTGCAAGGACTTGCGAGAGCTTCGGGTTTTCCCTGTGGATGCAAGGGAGGATACTGAAGGGCCTGTCTCTGAGGTTGGGTTAGAAGCGATTTCGCAGGGTTGTAGGAAGTTGGAGTCGATTTTGTATTTCTGCCAGAGGATGACTAATGCGGCTGTGGTGGCTATGTCAAAGAACTGCCCAGATCTTGTGGTGTTTCGTCTGTGTATTATTGGGCGGTATAGGCCAGATCATGTGACTCAGGAACCCATGGATGAGGGTTTTGGTGCTATTGTTATGAATTGCAAGAAGCTCACTAGGCTAGCTGTGTCTGGTTTGCTCACTGATCGTGCTTTTGAGTACATTGGGAGGTATGGGAAATCGGTTAGGACACTGTCGGTTGCCTTTGCTGGGGACACCGACACGGGCCTTAAGTATGTGCTTGAAGGATGCCCTAATTTGCAAAAGCTTGAAATCAGGGATAGTCCTTTTGGGGATGGAGCTCTTCGATCTGGTTTGCATCATTACTACAACATGAGATTCCTCTGGATGTCGAGCTGCAAATTGACACGCCAAGCTTGCCAAGAGATTGCACAAGCATTGCCCAACCTTGTTTTGGAAGTGATCAGCAACAGTGTGGAGAATGCAGGTGATGATATTGAGATATTGTACATGTATCGGTCACTTGATGGACCGCGGGATGATGCTCCAGGATTTGTTAACATTCTGCATTAG 2100 0.529 SLPYHLTFHTLFLHSLHSNFTFSPIPTLTNQTPQIQYPINQSKIPSFESKATVPDQTTPTQNIIHPLQQMRENHPSTNSEEDQRSSVLDLARAEITESSTSKTRNYGGFPDPASGSGPSEPQAPFPDQVLENVLENVLHFLSSRRDRNAASLVCRSWYRAEALTRSELFIGNCYSLSPARATTRFTRVKSVTVKGKPRFADFDLMPHDWGAHFTPWASALAQAYPWLEKLHLKRMTVTDDDLDLIADSFSGFRELVLVCCEGFSTHGLASVAAKCRLLRVLELVESVVDSEDEEEIADWILCFPESQTNMESLVFDCVECPINFEALESLVARSPRLKKLRLNRYVSMAQLHRLLLRAPQLTHLGTGSFSAAEPGVVGELEPDYTAAFEACRSLVCLSGFREIWADYLPAIYPVCANLTSLNLSYADVNAQQLKAVIRHCHKLQIFWVLDSICDEGLQAVAATCKDLRELRVFPVDAREDTEGPVSEVGLEAISQGCRKLESILYFCQRMTNAAVVAMSKNCPDLVVFRLCIIGRYRPDHVTQEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFEYIGRYGKSVRTLSVAFAGDTDTGLKYVLEGCPNLQKLEIRDSPFGDGALRSGLHHYYNMRFLWMSSCKLTRQACQEIAQALPNLVLEVISNSVENAGDDIEILYMYRSLDGPRDDAPGFVNILH 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01964 699 FunFam Transport inhibitor response 1-like protein 120 165 - -
Vimu1g01964 699 Pfam Transport inhibitor response 1 protein domain 187 232 IPR041101 -
Vimu1g01964 699 MobiDBLite consensus disorder prediction 96 125 - -
Vimu1g01964 699 FunFam Transport inhibitor response 1 166 698 - -
Vimu1g01964 699 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 206 649 - -
Vimu1g01964 699 Gene3D Ribonuclease Inhibitor 167 698 IPR032675 -
Vimu1g01964 699 SMART LRR_CC_2 249 274 IPR006553 -
Vimu1g01964 699 SMART LRR_CC_2 557 580 IPR006553 -
Vimu1g01964 699 SMART LRR_CC_2 606 630 IPR006553 -
Vimu1g01964 699 SMART LRR_CC_2 497 521 IPR006553 -
Vimu1g01964 699 SUPERFAMILY RNI-like 152 660 - -
Vimu1g01964 699 CDD F-box_AtTIR1-like 127 165 - -
Vimu1g01964 699 SUPERFAMILY F-box domain 125 160 IPR036047 GO:0005515
Vimu1g01964 699 Gene3D - 121 165 - -
Vimu1g01964 699 Pfam F-box 127 166 IPR041567 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01964 Vimu-Chr1 26030581 26032926 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01964 - - gmx:100807836 1079.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01964 1 26030581 26032926 Vimu1g01964 1 26030581 26032926 ECH