Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01948 ATGGGCGATTTTACGGTTGCGTTAAACCCTCCAAAAACCTTCGGCCCCGAGATTCTACCACCCATCAATCGCATTTCCGCGGCGGCGCGTGGGCGCGTAACCAAAATCTCTTTCAAACCGCACGGATTTCGAGCAATCCGCGCCTCGGTGATGCCGAGTGAAGGCCAGCAACAATCGTCTCTGGGAGACTCTCTCGTGAACAGTCCGCACAGAAACCACGTCGTTGATGTTATCAGAAAGAGCGCAATCTCTAACTGCCTCTCCGAAACTAATCTCCACAACACCGTTCCTGGTCTCGTGTCCAAAACCCGCGGCAAAGTTCGAGATATTTACGACGCCGGGGATTACCTCGTTTTGGTGACCACTGATAGGCAGAGTGCATTTGATAGGATTCTTGCTTCCATTCCTTTCAAAGGCCAGGTTTTGAATGAGACAAGTTTGTGGTGGTTTGAAAGAACTAAGCAGATAGTTCCTAATGCAGTTGTATCGGCTCCGGATAAAAATGTTACAATAGCTAAGAAATGCTCAGTTTTCCCTGTTGAATTTGTTGCAAGAGGATTTGTAACTGGAAGTACTGATACATCTCTATGGACAGTCTACAATAAGGGTGCTCGGAACTATTGTGGAAATGTCCTCCCAGATGGAATGGTAAAAAATCAGAAGTTGTCTGAAAATATACTCACTCCAACAACCAAAGCTGCAGATCATGATGTTCCTGTCACTCCAGATGAGATTATAGAAAGGGGACTGATGACTCGATCTGATTATGAAGAAGTGAGTGAAAAAGCATTATCCTTGTTTGAATATGGACAGCAAGTGGCTTCAGAGCATGGCCTCATATTGGTAGACACTAAGTATGAGTTTGGGAAGGCAAATGATGGTTCAATTATGTTGATTGATGAGGTCCATACTCCTGATTCAAGTAGATATTGGATTGCCAGTTCTTACCTGGAGCGCTTTCAAAATGGTCTTGAGCCTGAAAATATTGACAAGGAGTTCTTGAGGCTGTGGTTTAAAAGTCACTGCAACCCATACGAGGATGAGGTCCTTCCCGATGCTCCCGAAGATCTTGTTTGTGAGTTATCCTGGCGATACATTTTCTTGTACGAGACTATAACAAACTCAAAGTTTGAGATGCCATTGACCGGGGAGCCTATACATGACCGAATTTCTCGAAACGTTGCATCTGCACTGTCATCTTTAAAGTAG 1209 0.4475 MGDFTVALNPPKTFGPEILPPINRISAAARGRVTKISFKPHGFRAIRASVMPSEGQQQSSLGDSLVNSPHRNHVVDVIRKSAISNCLSETNLHNTVPGLVSKTRGKVRDIYDAGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFERTKQIVPNAVVSAPDKNVTIAKKCSVFPVEFVARGFVTGSTDTSLWTVYNKGARNYCGNVLPDGMVKNQKLSENILTPTTKAADHDVPVTPDEIIERGLMTRSDYEEVSEKALSLFEYGQQVASEHGLILVDTKYEFGKANDGSIMLIDEVHTPDSSRYWIASSYLERFQNGLEPENIDKEFLRLWFKSHCNPYEDEVLPDAPEDLVCELSWRYIFLYETITNSKFEMPLTGEPIHDRISRNVASALSSLK 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01948 402 Gene3D - 179 322 - -
Vimu1g01948 402 ProSitePatterns SAICAR synthetase signature 2. 281 289 IPR018236 GO:0004639|GO:0006164
Vimu1g01948 402 FunFam Phosphoribosylaminoimidazole-succinocarboxamide synthase 89 181 - -
Vimu1g01948 402 FunFam Phosphoribosylaminoimidazole-succinocarboxamide synthase 177 326 - -
Vimu1g01948 402 PANTHER PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE 47 398 - -
Vimu1g01948 402 ProSitePatterns SAICAR synthetase signature 1. 177 191 IPR018236 GO:0004639|GO:0006164
Vimu1g01948 402 Gene3D Phosphorylase Kinase; domain 1 88 178 - -
Vimu1g01948 402 Pfam SAICAR synthetase 103 348 IPR028923 -
Vimu1g01948 402 SUPERFAMILY SAICAR synthase-like 98 377 - -
Vimu1g01948 402 Hamap Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 99 374 IPR028923 -
Vimu1g01948 402 CDD SAICAR_synt_Sc 104 373 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01948 K01923 - gmx:100801209 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01948 1 25681228 25688427 Vimu1g01948 1 25681228 25688427 ECH