Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01824 ATGGACGGCATAATGAGCAAGCTCCGCAACCTCGACGCGTACCCCAAAATCAACGAAGATTTTTACAGCCGCACGCTCTCCGGCGGCGTTATCACCCTCGCTTCCTCTATCCTCATGCTCTTGCTCTTCCTCTCCGAGATCCGGATGTACCTCCACTCGGTCACCGAGACCAACCTTGTTGTAGACACTTCCAGAGGCGAAACAATGCGTATCAATTTTGATGTCACGTTTCCTGCGCTTCCGTGTTCCATACTTAGTCTCGATGCCATGGATATCAGCGGAGAGCAGCATCTAGACGTTAAACATGACATAATCAAAAAGAGATTAGACTCTCACGGAAATGTGATAGAAACGAGGCAAGAAGGAATTGGTGCTCCCAAGATTGAAAAGCCCTTGCAAAGGCATGGAGGCAGGCTTGAGCACAACGAGACTTATTGTGGTTCCTGTTTTGGTGCTGAAACGTCTGATGATGATTGTTGTAATTCCTGCGAGGATGTTCGTGAAGCATACCGTAAGAAAGGTTGGGCACTTTCAAACCCGGATTTAATTGATCAGTGCAAAAGAGAAGGATTCTTACAAAGAATCAAAGACGAAGAAGGTGAAGGATGCAATGTGTATGGTTTCTTGGAAGTAAATAAGGTTGCAGGGAACTTTCATTTTGCCCCTGGGAAAAGCTTTCAGCAATCTGGTGTACATGTGCATGACCTGCTGGCCTTTCAAAAGGATTCTTTTAATTTAAGTCACCACATCAACAGATTATCTTATGGAGAGTATTTCCCTGGTGTCGTGAATCCTCTCGACAATGTGCATTGGATACAAGATACACCAAGTGGGATGTACCAGTATTTTATCAAGGTTAGAATTCTGTATCTCTACATATACTAA 885 0.4452 MDGIMSKLRNLDAYPKINEDFYSRTLSGGVITLASSILMLLLFLSEIRMYLHSVTETNLVVDTSRGETMRINFDVTFPALPCSILSLDAMDISGEQHLDVKHDIIKKRLDSHGNVIETRQEGIGAPKIEKPLQRHGGRLEHNETYCGSCFGAETSDDDCCNSCEDVREAYRKKGWALSNPDLIDQCKREGFLQRIKDEEGEGCNVYGFLEVNKVAGNFHFAPGKSFQQSGVHVHDLLAFQKDSFNLSHHINRLSYGEYFPGVVNPLDNVHWIQDTPSGMYQYFIKVRILYLYIY 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01824 294 Pfam Endoplasmic reticulum vesicle transporter 149 286 IPR012936 -
Vimu1g01824 294 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 5 286 IPR045888 -
Vimu1g01824 294 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 8 97 IPR039542 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01824 Vimu-Chr1 21687948 21694313 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01824 K20367 - gmx:100782309 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01824 1 21687948 21694313 Vimu1g01824 1 21687948 21694313 ECH