Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01748 ATGTGTAATCCCAACCCAACTTCACCATCTTCCTTTCTCCCTCCCTCTAAATCTCACCCCAAAGTTCTCTATCTTTCTCCTCATGATGATGATCAGGCTCAAGATGAATTGCACAGATGGCCTACCTTCAATGAGGCCATAGCAGAAATCAAGGCAATAGGGATGATATCAGGTCCAACAGCCATAACTGGTTTAGTGTTATATTCAAGAGCTATGATCTCTATGATTTTCCTTGGCTATCTTGGGGAGATGGAACTAGCTGGAGGGTCTCTCTCTATTGGTTTTGCCAACATCACTGGCTACTCTGTGATCTCTGGATTGGCCATGGGGATGGAGCCAATTTGTGGACAGGCTTATGGAGCAAAGCAATGGAAGCTACTTGGCTTGACACTGCAGAGAACTGTGCTCCTTCTGCTCTCAACATCCATCCCCATCTCATTCATCTGGCTCAACATGAAGAGAATCCTCTTGTGGTCTGGCCAAGACAATGAAATAGCATCAGTGGCTCAAACATTCATCATTTTCTCAATACCTGACCTTTTCCTCCTCTCACTTCTCCATCCTCTGAGAATCTACCTCAGGACTCAGAGAATCACATTGCCATTGACATATTGCTCAACCATCTCAGTTCTTCTCCATGTGCCTTTGAATTTCCTCCTGGTGGTTCATCTCAAGATGGGAATTGCTGGGGTGGCTACTGCAATGGTGTTGACCAACCTCAATCTGATTCTCTTCCTCTCCTCTTTTGTCTACTTCTCTGGTGCATACAAGGCCTCATGGGTTCCCCCAAGCGTTGACTGCATCAAGGGGTGGTCCTCATTGCTGTCACTTGCCATTCCAACCTGTGTCTCAGTTTGCCTTGAGTGGTGGTGGTATGAATTCATGATAATGCTATGTGGCCTTTTGGCCAATCCAAAAGCAACCATTGCTTCAATGGGAATCCTCATCCAAACAACATCTTTGGTCTATGTGTTCCCATCATCACTCAGCCTTGGTGTTTCCACAAGAATAGGGAATGAGCTAGGTGCAAACAACCCTGGAAAAGCAAGACTTTCCATGATAGTATCACTCTTTTGTGCTGTGGCATTAGGCCTTGCAGCCATGCTGTTCACCACCTTGATGAGGCACCAATGGGGCAGATTCTTCACCAATGATCATGAAATTTTGGAACTCACATCAGTAGTGCTGCCAATTGCTGGCCTCTGTGAGCTTGGAAACTGCCCACAGACCACAGGCTGTGGAGTCCTAAGGGGCAGTGCAAGACCTGCCATTGGTGCCAATATCAATTTGGGCTCATTTTACTTGGTGGGTATGCCAGTGGCTATCTTTCTGGGCTTTGTGGCCAAAATGGGGTTTGCAGGGCTTTGGCTTGGGTTGCTTGCAGCCCAAGTCTCCTGTGCAGGCCTCATGCTCTATGTTCTCTGCAGAACAGATTGGAATGTGGAAGTAGAAAGAGCCAAGGAACTCACAAAAATAACCTCAACTACTACTACCACTTCTTCTGCTGCTGCTGCTCCTGATTCTAACTCTAAGTTACCTACACTCACCCCAAAAGAGGCTAACATGAACAACAATGCTCATGCTTGTTGTCTTGAAGAGATAGTTATTACTGCTGCTGCTGATGAGTTTACCAATATTTCTTCACTTGAAACAGATCCACTGATCATTCCCACCACCAGACACACTCAAGTTTAG 1695 0.4614 MCNPNPTSPSSFLPPSKSHPKVLYLSPHDDDQAQDELHRWPTFNEAIAEIKAIGMISGPTAITGLVLYSRAMISMIFLGYLGEMELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQWKLLGLTLQRTVLLLLSTSIPISFIWLNMKRILLWSGQDNEIASVAQTFIIFSIPDLFLLSLLHPLRIYLRTQRITLPLTYCSTISVLLHVPLNFLLVVHLKMGIAGVATAMVLTNLNLILFLSSFVYFSGAYKASWVPPSVDCIKGWSSLLSLAIPTCVSVCLEWWWYEFMIMLCGLLANPKATIASMGILIQTTSLVYVFPSSLSLGVSTRIGNELGANNPGKARLSMIVSLFCAVALGLAAMLFTTLMRHQWGRFFTNDHEILELTSVVLPIAGLCELGNCPQTTGCGVLRGSARPAIGANINLGSFYLVGMPVAIFLGFVAKMGFAGLWLGLLAAQVSCAGLMLYVLCRTDWNVEVERAKELTKITSTTTTTSSAAAAPDSNSKLPTLTPKEANMNNNAHACCLEEIVITAAADEFTNISSLETDPLIIPTTRHTQV 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01748 564 CDD MATE_eukaryotic 49 485 IPR045069 GO:0042910|GO:1990961
Vimu1g01748 564 NCBIfam MATE family efflux transporter 69 456 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu1g01748 564 Pfam MatE 280 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu1g01748 564 Pfam MatE 59 219 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu1g01748 564 MobiDBLite consensus disorder prediction 497 517 - -
Vimu1g01748 564 PANTHER MULTIDRUG RESISTANCE PROTEIN 45 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01748 Vimu-Chr1 18419452 18421371 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01748 K03327 - gmx:100783792 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01748 1 18419452 18421371 Vimu1g01748 1 18419452 18421371 ECH