Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01743 ATGGGAACCGCTTGGAGAAGAGCCTTTTGCACTAGCGACCCAGAATCCACACTACAGTCCAAACGCATCACCCGAAGCCCCTCTCCTTCTCCTGGAACCTGCGCCAGATTCAGCTTCCTCTCCTCGCCGTCACTGCACCACCACCCTCCCTCTTCTCCGCTCTCCCTCTTTAAAAACACCTTCAAATTCAGAAGTAATTGCGGAATCTGTTCGAATAGCGTGAAGACGGGACAGGGAACTGCCATTTACACTGCAGAGTGCGGTCACGCGTTTCATTTCCCTTGCGTTGTTTCCCATGCACGCTCCCACGTCTGCCCCGTCTGTCATGCCACGTGGAACGACGTCCCGCTCCACCAAAACGACGCCGTCCTTCGCACCGTTCAAACCCCAAACCAGAAACCACTCGCTCCTCTTTTCTCCCAATCAGTAGCTTCCTACGACGACGACGAGCCTCTGCCTACTTCTCTCACGTGCTCCACGCAAATCGTTCCAATTCCTGAGGCCGATGAAAGCTCGCACGAGGATGAGGATGAAAACGATGATGTATCAGACTTCCCTGGCTTTTCCGTCCATCCAAATCCTCAATCCTCTTTGCGACACAAGGCTGAGTCGAAAACTGTTCGAGTCAAGCTCATGCACGAGTGCGCCATTATATCAGTTTCCCCAAACTTTGAAACTCGTGCTTTGGTTTTACGAGTCAAGGCTCCGGCGCAGTCGCCGCCTCTTCGGAGACGGCAGGCGATGGATCTCGTGGTGGTGCTTGACGTTGGCAACGGTATGAACGGCGCGAAGCTTAACGTGTTAAAGCGCGTGATGCGACTGGTGGTATCCTCTCTCGGGGCTGCTGACCGGCTTGCCGTCGTGGCTTCGTCGGCTGATTCGAAGCGGTTGTTACCTCTGCGCAGAATGACGGCTCAGGGACAACGCATGGCTCGGCGCGTGGTGGACGGGGTCGTGTGTGGCCAAGGATCCGGTGTTGGTGATGAAGCGATTAAGAAAGCGGGGAAGATTCTCGAAGATCGCAGAGAGAGAAATCCTCTAGCGAGGATTTTACTTCTATCCAACGGTGATCACAACAGCATGAGCAATAATCAACGGAGAAGCTTGAGCTACGTGTCCTCTATCGGGTTCGATTGTGTTGAAGTTCCGGTTCATTCGTTTGGGTTCGACAAAAAAAGGACTGGTTTAACAGCCGAACCGCTTGAGGATGATTTTATCCCATACATTAAAAGAACATTAAGCGTGGCGGTGCAGGATTTAAGAATTCGGCTTGGCTTCTCTGCGCCGGCTGAAATTCGAGCCGTTTATTCATGCAGCGGGGGGCCCACCGCGCTAAACGCAAACTCGGCTAGGCTTGGTGATTTATACGGCGAAGAAGAGAAGGAGTTGTTGGTGGAGGTCAGAGTGCCAATGTCAGCATTGGGGAACCACCACGTGTTGACAGTGCAGTGTTTCAACAAAGACCCAGCGTCTCAAAAATTCGTGTACAGTGCAGAACACCCATTTACGGTGGTGCCGCCCAAGAGTTCTTTTCCCTGCGGCGGCAGGGTTGAGCGGTTGAGGAATGTGTTTATAACCAGCCGAGCCGTAGCCGAGTCAAGGAGGATGGCGAAACACAAAGAGTTTTTGAGCGCTCATCATTTGCTTGCTTCGGCTCGTGCGCTTCTAGTGCAGTTCAGCTCTGCGGAGGAGTACGTGCGCAGCTTGGACGCGGAGCTTGCAGAGCTTCAGTGGAGAAGACAGCACCGGGAGACGGTGGGGACGGGGCGGAGTGGAGAGAGGGAGAGGGAGCTAAGATTGGTGGATGACGGAGGCGAAATGTTGACGCCGACATCGGCTTGGAGAGCCGCTGAGAAGCTGGCTAAAATGGCTAGAATGAAGAAATCGTTGAATAAAGTTGGCGACTTGCACGGCTTCGAAAATGCTAGGTTTTAA 1935 0.5339 MGTAWRRAFCTSDPESTLQSKRITRSPSPSPGTCARFSFLSSPSLHHHPPSSPLSLFKNTFKFRSNCGICSNSVKTGQGTAIYTAECGHAFHFPCVVSHARSHVCPVCHATWNDVPLHQNDAVLRTVQTPNQKPLAPLFSQSVASYDDDEPLPTSLTCSTQIVPIPEADESSHEDEDENDDVSDFPGFSVHPNPQSSLRHKAESKTVRVKLMHECAIISVSPNFETRALVLRVKAPAQSPPLRRRQAMDLVVVLDVGNGMNGAKLNVLKRVMRLVVSSLGAADRLAVVASSADSKRLLPLRRMTAQGQRMARRVVDGVVCGQGSGVGDEAIKKAGKILEDRRERNPLARILLLSNGDHNSMSNNQRRSLSYVSSIGFDCVEVPVHSFGFDKKRTGLTAEPLEDDFIPYIKRTLSVAVQDLRIRLGFSAPAEIRAVYSCSGGPTALNANSARLGDLYGEEEKELLVEVRVPMSALGNHHVLTVQCFNKDPASQKFVYSAEHPFTVVPPKSSFPCGGRVERLRNVFITSRAVAESRRMAKHKEFLSAHHLLASARALLVQFSSAEEYVRSLDAELAELQWRRQHRETVGTGRSGERERELRLVDDGGEMLTPTSAWRAAEKLAKMARMKKSLNKVGDLHGFENARF 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01743 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 136 IPR013083 -
Vimu1g01743 644 SUPERFAMILY vWA-like 235 362 IPR036465 -
Vimu1g01743 644 SMART ring_2 67 108 IPR001841 -
Vimu1g01743 644 ProSiteProfiles VWFA domain profile. 249 402 IPR002035 -
Vimu1g01743 644 MobiDBLite consensus disorder prediction 168 201 - -
Vimu1g01743 644 SMART VWA_4 247 418 IPR002035 -
Vimu1g01743 644 Pfam von Willebrand factor type A domain 249 362 IPR002035 -
Vimu1g01743 644 SUPERFAMILY RING/U-box 66 123 - -
Vimu1g01743 644 ProSiteProfiles Zinc finger RING-type profile. 67 109 IPR001841 -
Vimu1g01743 644 Pfam RING-like zinc finger 66 96 IPR001841 -
Vimu1g01743 644 Gene3D von Willebrand factor, type A domain 248 403 IPR036465 -
Vimu1g01743 644 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 65 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01743 Vimu-Chr1 18190735 18192749 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01743 - - gmx:100795015 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01743 1 18190735 18192749 Vimu1g01743 1 18190735 18192749 ECH